Dlut008361.1
Basic Information
- Insect
- Dyspetes luteomarginatus
- Gene Symbol
- -
- Assembly
- GCA_963669185.1
- Location
- OY769906.1:23020495-23024400[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.041 3.4 8.4 0.3 3 21 8 27 6 28 0.85 2 14 1.3 1e+02 3.7 0.0 2 21 34 53 33 54 0.91 3 14 0.62 51 4.7 0.3 1 12 239 250 239 259 0.88 4 14 0.019 1.5 9.5 1.5 1 23 450 472 450 472 0.98 5 14 0.001 0.083 13.5 0.1 2 23 476 497 475 497 0.97 6 14 0.0003 0.025 15.1 2.6 1 23 509 531 509 531 0.98 7 14 0.027 2.2 9.0 0.2 1 23 550 571 550 571 0.95 8 14 0.00093 0.076 13.6 0.0 2 23 577 598 576 598 0.95 9 14 5.7e-05 0.0046 17.4 4.8 1 23 663 685 663 685 0.99 10 14 2.4e-06 0.0002 21.7 3.7 1 23 691 713 691 713 0.96 11 14 0.00028 0.023 15.2 4.1 1 23 719 741 719 741 0.97 12 14 1.7e-06 0.00014 22.2 0.8 1 23 747 769 747 769 0.98 13 14 0.00011 0.0088 16.5 0.2 1 23 773 795 773 795 0.99 14 14 0.00047 0.038 14.5 0.2 1 23 803 825 803 825 0.97
Sequence Information
- Coding Sequence
- atgggttCGATGAGTCTTGTATGTCCAATGTGTTGTGGAGAAACTTTTGACAATTCACAATCattgaaatatcatttattGAGCATGACCGATAATCTTTATTGTCCAAACTGTGCCGAACGTTCGGACTCTGTCTCGGCGTTAATTCAACATTTGGACACCTGCGGCGATACCGTCGAAATTACGAAAGCTCAGCCTGTACGAGATATCGAGAACGAGACGCAAGATGATATCGAATCGGTTTCTGTCGAAACTCGAGAGGATTCTATTCATCATAGTTTTTTGGCAACTGTTAATGAGGATGGAATTGTCATGGTTGGTAATTCACGAGCTATGGGAAATATtgcggaggaggaggaggaggcaCAACAAAAGCAGATTGTCCAGAAAATGGATATTGACGAGGATCccagagatgatgacgatattttgaaaaatctcgataaGGGAGAAACTATGATGGATGGTGAATTAAGCggtgatgatgagataaatcacgaaaagagtgaaaaaaatgtgaaaaatgaaagtaatTCAAGTGGAATGGAGGAATCAACGGAATTAATCGAGCAAGAGGCTAATGAGGAGCCGGATGATTCGAATTTGGTGGCAATTGAAAGTTTGGACGATCATCATCAAGTACAAGAACAATTGGACGAGGCAGGACTCGTCCAAGTAAAGGAGGAGATGTGCGAGGTCGAATCAGAAGCTCTTTACAGTTGCAGTAGTTGCGGCATGAGTTTCAACAGTGTATTATCGCACATAAAAGAGTATCACGATGGTCAGGAAGTTGTGCTGGAAATGGCAGAGCAACAAATTGAAGATTTGCCAGACGACACAGGAGAGACAATAATAAGtaacgaggaggaggaggaggaggaggaggcggCGGCTGTGGCGGCGGCAACAAGTCCAGCAAAGAGTAATTCACGTTTAGTCGAGGAGATTTCGAGCGTTGCCGGAAGTGGCCCAGAGCGTGTTTCTTGCAGCGGTGGATTGCCGCGTCACCGTCAAACGATGAACACGCTGAGAACGGAGGAATGCGTGGACAGCGAGGGTCGTTTGTACACGAGAAAAGTTGTCCAAATTGAGAGATTTTGGGACCGAGGTCATGGAGCACCAACCGGAGCCCAATCGCAattgcagcagcagcagcatcgtCAAGCGACAAAAAATGCGCCaatgattgagaaatttttttcaaacgcgGAGGGTTTAAAAATTTGCGCAAAAAATTCGACATTAACGTTAAAAAGTAGCACAGGAGAAATCAGCAGCAGCGGCGGTGgcgaaagatcgaaaaatattggaaattcGTCAACTGCGACAAATTCATCGGTGCGAAAATATCGATGCAACAAATGTCTCGAGCAATTTATAAAGCTCGCTGATTTTCGTGTACACGCGTGTATACACGGTAACAATCAGTGCGATTTGTGCGAGCAGGCATTTGCGAGCGCGAAAGCTTTGCAACTGCACTCGAGAATTCACGAGGCCGAGGCCGAGGCTGGCAACGACAGtaatttcgtttgtttgacTTGCGGCACCGAATTTTCCTCTCACAAAAGTTTGAGATTGCACTCGAGGATGCACGCACCGGTCAGGGCCCGACATGTCGACGCTCCCGAGGGTACcggcgatgaaaattttacctgtCTCGAGTGCGGCAAAGTTCTCTCCGAATCTTACAGAAAAGCTCACATGGCCCTCCACAAGGGTGACTCTGTTACCTGCTCCGTTTGCAATCGTAAATTTGATTCGGCCGACAGTCTCGCCATGCATGCCGCTGTTCACgttgaattttcacaattgcaacaaaaaaaacaagaaaaacatcaacagcaacaacaagaACTTGCATCGGAGGTTGCACGTGACGAGGAAGCCAATGGCGTTAAACGCTCAACGAGAGGCAAAAAAGgtggcgaaaaaaattcaactcgcGGCGCCACTGGCGGTGCAGCTGGAGATGCTCAAGAAAAACCTTATCAATGCCAGCATTGCGGTAGAAGATTTACGAGACCTCATGAAAAAGTTAAACACGAGAGAATACACACGGGAGAGAAGCCTCATGCTTGTGAGgtATGCGGAAAAACATTTCGCGTCTCGTATTGTTTAACTCTGCACATGAGAACTCACACGGGCGTTCGCCCATACGCTTGTCAGCATTGTGGCAAAAGATTCAAGGCGTCATCGGTTTACAATCATCATTTGTTAACCCACGGGGATGAGCGAGCTTACACATGTCCATATTGTCCAAAGACATTTAAAACTCGGGTGCAATTGGCCGGCCACAAAAATAGCCACACGAAGCCATTTCGTTGCACCGAATGTTCGCGGCCATTTGCATCGTTGTACGCTGCCCGGGCTCACATTCAGACACACAAGAAggacaataatttaaaatttagcTGTTACATATGCGGCGCCTCGTACGGACGTGCATTTGCCCTCAAGGATCATTTGAAGCAGCACACGGAAGGGCAGGACGTTCTGGCCCCACCGGAACCAGCGAGGGAGGAAGAAGTTGCCGACGCTGATGATTTTATCATTACCGAAGAGACCGAGGAGTACGaggaaattgaagaaattgagGAAATGGAAGAAATCGAAGAAGAGGAACACAAACTTAtcgctgttgctgctgctgccgctgctACTGCGACCGCCGATCATGAGCAATCTGAATAA
- Protein Sequence
- MGSMSLVCPMCCGETFDNSQSLKYHLLSMTDNLYCPNCAERSDSVSALIQHLDTCGDTVEITKAQPVRDIENETQDDIESVSVETREDSIHHSFLATVNEDGIVMVGNSRAMGNIAEEEEEAQQKQIVQKMDIDEDPRDDDDILKNLDKGETMMDGELSGDDEINHEKSEKNVKNESNSSGMEESTELIEQEANEEPDDSNLVAIESLDDHHQVQEQLDEAGLVQVKEEMCEVESEALYSCSSCGMSFNSVLSHIKEYHDGQEVVLEMAEQQIEDLPDDTGETIISNEEEEEEEEAAAVAAATSPAKSNSRLVEEISSVAGSGPERVSCSGGLPRHRQTMNTLRTEECVDSEGRLYTRKVVQIERFWDRGHGAPTGAQSQLQQQQHRQATKNAPMIEKFFSNAEGLKICAKNSTLTLKSSTGEISSSGGGERSKNIGNSSTATNSSVRKYRCNKCLEQFIKLADFRVHACIHGNNQCDLCEQAFASAKALQLHSRIHEAEAEAGNDSNFVCLTCGTEFSSHKSLRLHSRMHAPVRARHVDAPEGTGDENFTCLECGKVLSESYRKAHMALHKGDSVTCSVCNRKFDSADSLAMHAAVHVEFSQLQQKKQEKHQQQQQELASEVARDEEANGVKRSTRGKKGGEKNSTRGATGGAAGDAQEKPYQCQHCGRRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYACQHCGKRFKASSVYNHHLLTHGDERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAARAHIQTHKKDNNLKFSCYICGASYGRAFALKDHLKQHTEGQDVLAPPEPAREEEVADADDFIITEETEEYEEIEEIEEMEEIEEEEHKLIAVAAAAAATATADHEQSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -