Basic Information

Gene Symbol
ARID5B
Assembly
GCA_963669185.1
Location
OY769905.1:14578000-14590800[+]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 2.7e-23 5.8e-20 71.6 0.0 2 89 296 381 295 381 0.95
2 3 9 1.9e+04 -12.1 9.5 61 61 765 765 739 792 0.49
3 3 9 1.9e+04 -10.6 7.7 67 67 964 964 940 985 0.43

Sequence Information

Coding Sequence
ATGGCCAAAGAGGGTCGTTGTAGTTCGGTCAAAGTTCAAGGTATTTGCACGAGACGACGCTACCTTCCGGAAGTATTCCGGTCGATCAAGCAGGGAACCCCTTTGCTCCAGGACGAGGTGCTGACAATTTCGGAAAAAGTGGTAGTGCGAGTTCACGATCTCGTGACTTGGCTTTCACCATCTGCTGAGTGGTCCTGGGGACGCGAAGTACCGCTTCATCAATCGCCAAAATCATCGTCAACGGATAATAATAGTCCTCAAAAGCACGATGGAACATATCCTCATGTCCTGACGGATCCGGGAATTGATTTTACGGACGTCGACAAGCAACAGAAAGAATTTGAGACGAATCTCGATGCGACGAATATACCGGACGACGaaacaacgacaacgacatcGGAGACCacgacgacaacaacaacaacaacatcaacGGCAATTGCGACAGGGACAACAACGATAGGAACATCAAACAAGTTACAAACAAGAGTAGTTGTATTGTCATATGCAAGGTATTGTCGCTATCGTGCCCTATTGAGAAGGCTCGAGGGTACCGAACCATCGTGGTTATGCTCATCGGTCGCTGCAGCTCTTGGTGGATTCACAGCACTTCCGGGCACGAGAGTTTTATTCTGCAGGGACACTTTTGACTATCCCGATCTCGAGACGCACGAGCTTCTTTGCAATCATTTagCGCCAAAACTCAAAGGAAGACCGAGAAGAAAGCGCAAAAAGCGCAGCGTGTCACCTGGTGAATCGAGCAACGAAAGCGAAGCTTCGGTAGCGTCGACGTCACGGGGTGCAATCACAAATTTGAGCCTCGTTCCTGCATTGAGACCACCTTCTTCTGGTGTTCGTCGTAGCGAGAGGAACACGAGCGGTGAAGAAAAGAGATTCCTCACAGACGTTCATGGTTTCATGAGTTCACGGGGTACACCCGTTGGAAAGATGCCGTTGCTGGGTTACAGGCAAATCGATCTCTtcctattttataaaaaagtaCAGAAACTCGGTGGTTACGATTCCGTGAGTGCTGGACGTCTCTGGAAATCGATTTACGATGACATTGGTGGTAACGTTGGTTCAACGAGCGCCGCAACGATAACCCGAAGACACTACGAGAGATTGTTATTACCGTACGAGAGGCATCAAAAAGGTGAGGAGATAAAGGTGAGGCCCACACACGGAAGGCGAATGAAATCCGGAAATTTGTCCGATGAATCGAACGAAACGAAGCCGGAAATCGGAAGGATATGCAAGTCGGAGACTCCACCACTATTGGAATCGCCAACGGTCACCTCTCCGGTTCCACCACTTCCGTCAATTTTATCCACATCGCCTTTCCTAATTGGCGACAAGCCAAAGACTGAGAGCGGCAAGACATCGTCCCTTCGTAGTGTTAGAGTCAAGCCGGAGCGTCTAAAATCGCTGAGCACTATAATAGCAAATAGCACACCGGTCGTAAATCAAAATAGTCAACTGTCGAGTCCAAGTCCACCACCTTCGTCAAACGCGTCGAGCACGTCAATGACTAATACGCCCAGCAGTACACCATCGACAACACCAACGAGCGGCACGGGTGGCATAGACAATTGCCTTGACAATGGCGTCGTAGTCGTTGGTCAGAGTGTACTTGAGCGTCAGCTGAATAGTCCGTTGATATCGCAGCAAGTTCCACCCACTTCACCATCGCCACCAGGCTTGACTGTTACCGCTGTAACGACAAATCCAACGCCGGTAGTTACGCTCACACCACCACCGGAAAAGGAAATGAAAGAGCTGAAGATCGATCAAAAATCAACAACACTTTTGGCACAGGGCAAAGAGAACATACCGTTATTCGGTGAAAAGCCAATATTTGCGGAAAAAGCTATCGTACCCCCAAAATCACCGGAAGTCATTGATCTCGAGATGGAAAATGACACGAGTCGCGACAAGATCGTTATACCAAGTTTTAAGAAACGAAAATTGGAGATATTACGTGAGGGTGGACTCGAGGTGACTGCGGTCGATTTGGATGCCAGACCGAGTGTTATACAAGCCACCATTACACCCATAACAGCGACAACTCCGTACACGGGAAAAATCGACGATAAGAGCAATCAGTCGTTTTCTGTCCCGACAACGCCAAACTCTGTACCTAAATTGATCTCTGTCACTGTAACGCCGGATATTGGTCATATGTTATCATCGCCGAAggaacagcagcagcaccaacaacagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcaacagcaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaaacgGTCAACTGCAACAGCAATTCTCATCAACAGTCCCAACAACAAACGAGACTTTCAACACCTACTAAGCCATCCTCCAATCATCACAATCATCATCCGCCAATTCACCAaataaacaacaacaataatagtGTCGTGATAAATAACAACACCAGCAACAATACGATAAATAGTCGAGTGATAAATGTCGGTAGTCCGAACAACGCGAGTTTGTTGCAGCTGTACGCAAACGCGACAAATTCGACACAAGCTTCGGGATCGCCGTCGCCACCAGCCAGCAATCATCGTTTCGTACCATCCGTCTCGACAAACGAAAGGCTAGGACCTCCCAAAGTCATGCAATCACGCTCGATATTTGCTCACAGCGAGAAAATGGTCTATGGTAATCCTAAAGACATTCTCATACCCCAAAAATATCATCATCCAATggcacagcagcagcagcagcaacagcaacagcaacagcaacagcaacagcaacagcaacagcaaaagcaacagcaacagcaacagcaacagcagcaacagcaacagcagcagcagctacaacaacaacaacaacaacaacaactacAACATTTACCTCCACCGCTCAACATGAGCAACAGCAACGCTTCTTCTTCGAGTGGTATACTCGATCTAACGCAGAAACAAACGGATCGTTCGTTTGCGAGACCAAATCTCGAGATTGTCCGAGTACCAGTCGTACCAAGGCCAAATCCTCTGAATCTCGAGATGAAAAGTATACCATCGAAGGAAAAGAAACAACAGCACGAGGTGATATCTCGAAAAGCGACATTTCCCGGTTACGCTGGAATGCTCGATAGTCGAACAATGGCTTCGAACAATCTTGAGATAACACTCGTCAGTCCGAAACATCGAGGACAGCATCCTGCTGCACCCCTTCAGGTCCATCAACCCTCGCCCAGTCCGCCATCCGCCAGACTtcacaacagcaacagcagcaacaattccaacaacaacaataacaatattaatagcagcagcagcagcaacaacaacagcggCACAACGATGAACAACGTAAATAATACGCTGACCAGTCAAACTAATACGCTCACGAGTCAACAAATACAGAGACGTCATCAGAATGGCAAATATCCCTCGAGATCCGAGCCGGTCTTGCCTTATGCCTCGAGAAAGCCTAGTCATCCTCCGATTATTCCAAATGTGCCGAATCTTCATCATCTCAATAATACATCTTACACGTCCTTGAGAACGAGCAGCatgcagcagcaacaacaacatcaccatcagcagcagcagcagcagcagcagcaaattTTTGCCGATAAGAGAAAAGCAAGCAACGACACATTGAGCAGAGATCACATGAACAATCATCGAAGAATAAGCGAgagtgaaaaatcatcgataatcgCCCAACAGCAACAGATGCAACAGCACAAGCCAATAAACTCATCGTCGCAGAGGCAAAATTCAGATTCTTCAAGACGTCAAAGTGTTCCTACGACGAGCATACCACCAGCATCAGGCTTTGTTCCCACAATGCAACAAAATCCATCACCGGCATTTCTCTCCCAAATGCCAAATGGAGCTAGCAAATTTTTACCTATACTCGATCCGTTGTATTATTCGGCATTTTACAATGGCCTCTTTCCATCACCGATGCCACCATCTGCTACGCCCTATATACCACCCGAATTTAGCGCATATTATAAGGAATTGCTGGCATCATCGCAACCAAGACTAGCAATGACTGGACAGCATCAACCAGCTGTACCAACGTCTAAGTAG
Protein Sequence
MAKEGRCSSVKVQGICTRRRYLPEVFRSIKQGTPLLQDEVLTISEKVVVRVHDLVTWLSPSAEWSWGREVPLHQSPKSSSTDNNSPQKHDGTYPHVLTDPGIDFTDVDKQQKEFETNLDATNIPDDETTTTTSETTTTTTTTTSTAIATGTTTIGTSNKLQTRVVVLSYARYCRYRALLRRLEGTEPSWLCSSVAAALGGFTALPGTRVLFCRDTFDYPDLETHELLCNHLAPKLKGRPRRKRKKRSVSPGESSNESEASVASTSRGAITNLSLVPALRPPSSGVRRSERNTSGEEKRFLTDVHGFMSSRGTPVGKMPLLGYRQIDLFLFYKKVQKLGGYDSVSAGRLWKSIYDDIGGNVGSTSAATITRRHYERLLLPYERHQKGEEIKVRPTHGRRMKSGNLSDESNETKPEIGRICKSETPPLLESPTVTSPVPPLPSILSTSPFLIGDKPKTESGKTSSLRSVRVKPERLKSLSTIIANSTPVVNQNSQLSSPSPPPSSNASSTSMTNTPSSTPSTTPTSGTGGIDNCLDNGVVVVGQSVLERQLNSPLISQQVPPTSPSPPGLTVTAVTTNPTPVVTLTPPPEKEMKELKIDQKSTTLLAQGKENIPLFGEKPIFAEKAIVPPKSPEVIDLEMENDTSRDKIVIPSFKKRKLEILREGGLEVTAVDLDARPSVIQATITPITATTPYTGKIDDKSNQSFSVPTTPNSVPKLISVTVTPDIGHMLSSPKEQQQHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQTVNCNSNSHQQSQQQTRLSTPTKPSSNHHNHHPPIHQINNNNNSVVINNNTSNNTINSRVINVGSPNNASLLQLYANATNSTQASGSPSPPASNHRFVPSVSTNERLGPPKVMQSRSIFAHSEKMVYGNPKDILIPQKYHHPMAQQQQQQQQQQQQQQQQQQQQKQQQQQQQQQQQQQQQQLQQQQQQQQLQHLPPPLNMSNSNASSSSGILDLTQKQTDRSFARPNLEIVRVPVVPRPNPLNLEMKSIPSKEKKQQHEVISRKATFPGYAGMLDSRTMASNNLEITLVSPKHRGQHPAAPLQVHQPSPSPPSARLHNSNSSNNSNNNNNNINSSSSSNNNSGTTMNNVNNTLTSQTNTLTSQQIQRRHQNGKYPSRSEPVLPYASRKPSHPPIIPNVPNLHHLNNTSYTSLRTSSMQQQQQHHHQQQQQQQQQIFADKRKASNDTLSRDHMNNHRRISESEKSSIIAQQQQMQQHKPINSSSQRQNSDSSRRQSVPTTSIPPASGFVPTMQQNPSPAFLSQMPNGASKFLPILDPLYYSAFYNGLFPSPMPPSATPYIPPEFSAYYKELLASSQPRLAMTGQHQPAVPTSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-