Basic Information

Gene Symbol
JARID2
Assembly
GCA_963669185.1
Location
OY769903.1:29676953-29683764[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 8.5e-23 1.8e-19 70.0 0.0 6 89 1374 1455 1370 1455 0.94

Sequence Information

Coding Sequence
ATGGTATTGGGCCGAAATGacaagagaaaaaggaaagagGGAGATCTCGTGGATCTCATGGATCCACTGTCCGAATCACCCAAGAGGACCAAAGTTCATGCACAGAGAAAATTTGCTCAAGGCGCAGCAACAGTCTTCAGTCCTGCACCTGTGCTGGtcaaggaaaaggaaaaaagtaaaCCTGCAATGATCACCGAGCTCATATCGCACAAACGACCCAATACCGAGgattttctcacttttctctGCTTTCGAGGTACTTCAATATTGCCACCGAGCTTGAATTTCTTCAATGTGGgctcgagaaaagaaaaactcgaTTCTAAAGGATCCGGAGCTGGAAAATCAAACGCAAAATCATCGGCGTGTACAAAATCATCGTCAGCGTGCACGAAATCATCGTCATCGTGCACAAAATCATCGTCATCGACCTCAGTATCTTTGACAATTCCTACAAAATCTGGTTCGACTGTAAACCCTCAGAGCAAAGTGGCTACAAAAAATACCTCACCAGTACAGAAAAGAATTGTGACTAATGGAGTTCAgaaaactttgaataaatacaaaaatgcaACATCGACGGTTCAggcattaaagaaaaaatatcaggAGCAACGTTTGGCAAagcaacgaataaaaaataaatttaaagcaTCCTGCGTGATGAGAACGCGCTCATCTACCGAGCGTGTCGTTTTAAAATCTGTGACAAAGCTCGCAACGAGACAATTTATATCTCGCAATGAGACAAAAAGACGTCACGGTCTTCGAAGCGGTGGAGTTACCGACagagcgaaaaaaacaaacatttcaGTGGCAAAAGTCACAAAATCAATTCCACCGAGGCCAAAAAAGCGTATTATCGTTAAGGATCAAACGAGCGAATCATCAGATTCGGAAACGGCCTCGTCCGATGACGATGACGCGGAGTCGAGACGATCAAAAAATCCACCGCAAACGAAGAAAATGGCAAATAAGacaatacagaaaaaaatttgtacacgCAGCAAATCTGAGATGAGACGAATAACGCGATCGCAGAGGGAAAGctcaacgacaacgacaacgacaacgagcCAGCAAGCTTCACTCTCGAGAAGACCGTCGAGAAAGACCAAAGAAGCTGCTGCTGTTTACATGGAAATTCTTGGACGTAAACTCGTCAGTCCTGATATtgaaaatgatgataatatcTCGGTCGATAGCTTTCCCGAATTGCCAAATGCACGTCGAACTGCTCAGGCTGAGAACGAGATAAGAGCAAAATCAAAAGCAGCCAAGAGCAAAGATTCAAAGGAAAAAGATGCAAAAAGcgagaatacgaaaaattcggaaaaaattaaaggaaaacAGGAAAAACCAATTTTAAAGAGCAAGAGGACATTGAGAGTAAGAAGATACTGCGAATTGGACAGTGAGGACGAATCCGAGACATCCGTAGAGCCGGAAAAAACGCGACACCTGATACGCCGAAGTGcgacaaaaattgacaaaccAGCGACGAGAAGTTTACGATCCTCGTCACGAAATCAACCGgcaaaattggaaataaaatcaacGACAAAATCCACCAAAGACAAAACTTTCGTGAAGCGTCCAAAGCCACAGGAAAAAAAGCCCGAAAGCGAGGAGTCCGAGGAGGAAGAGACACTTggaaatttgttgaataagctgaagaagaagagagaagaaaaagtggAAATACGAAAATCCTCGAGTCAGATCGATCCACCGATCGTTGTGGAATCCAAAGTCGAGATTTCGTCACGTAATGAAAGATCAAACGAGCCGAGTCAGGTCTCTGACGATGAGGAATCTTTTCGGGGTTTTACCGAAAAAGCCATATCGAAGGTTTTGAATTCTTGCCAGTCACACGCGAATGCAAATCTTCTCGCAACCGAAGAGGCTCGTGGAAAATTGGAGGTGACAAAAACTCAAGAAACATCCAAGACAGAAAATTCTGCAGAACGCGATGAGAAATGCGTCCTAAAGCTGGAAAATCCTGTCGAGCCACTAACGAGCCTTGCCACAACTTTTACAATCACAAAAGTCGTGCAGGAAAATTTACCAATTGCCCTGCCGAAAGTTGAGAATGCCATTCTGAAAGTTGAAgacaatttggaaaaaaaatgtaaccacAAGGCGGAAAATGAAGCAGCTATAATGAGTATAATGGATATGCCACTGACCGGAAATCATGGTCGAAAAGCTCGAGTCAACATGTCGACggaacaaattgaaaaatggctCAATGAGAGTTCAATGGCACGAGCTAAACAGAGAAATAAATCAGAGACTGAGAGTACGGCAAATTTTCACTTTGAGATACCGCAAAAGATGAAAAACGAGGTTAATCATTTGTCAATACCAACGAGAATTCAGCATCTTGTACGTCCGGTAAACGTGACGATTCCAAAACTCATTGAGAAAGCTGCACGTGAACGGGCTGGATTTCAGAGTAAAATTGTCACCAGTTTGATGCAAGGACCAAGACTTTGTCTCCCAAAACCTCTCAACATACCAATTCCCAatagaaataagataaatgCTGATATAAAAGAGATAATAAAAGGGAGAAGCGCAAAAGTAACGAGAGAAATTTCAACGGGCGAGGAGAGCGACAGCGTCTCAAAATCTGATCAAAATTCTATCGATGGTTCGcctgataaaaaatcaacgcCCGAGAAAAAGGGAATATTTCAACagcgtaaaacttttttgcCAAAGGtcaaagaacgaaaaattacaatacCGAGCGCAAATGCATTTTCACCAGAAAATGAGAGTAGCGTTTATGCCTTTGAGAGTGACACTGAGGTACCCATAAACACGCCATTTAGAAGAAAACTCAAAGAATTCGGGAGCAAAAGTAATTCTGGCCAATCGGAAACTGATACGAGACCGGAAACGGAAGATTCGCAAAAATTCAGCGAAGCTGGCACGAGCAGCGTTacggaattgaaaatttcctcAGAATCATCGAAGAGTTGTTCAATTCTTGATACTagcaatgataaatttgttatGCCAAAGAGTTTTGGTAATTTGTCAAATGTTCAAGTTTTACCACTTGGAAAAATGCCAACTGAATGGGGTGGAGCTACTTGTAGCGCTTCGATAGCCGTACaggtaaattttgacgaacaAACCCAGCAAATTGGACAAAAGGagcaacaaaaattgttacagAGTGAAGagaattatcataaaaatttacaatttcgcGATAATGATGATGGACAACAAAAATGTACGGAAATTTCAACGCAAACGGAAAATacgaatgataatgagagcgATAACGATGGCCACGTTTTTTACATACCACTTCAGACCGTGGGAAGAAATGGACCAAATCTCGTTCAAGGACAACAATTGATACAAGGAGTTGCCGTTAAGCTTGGGACCGAAGGCCCAAATGGACCAAATCAACGAGTTTTATTGAGAGCACAACTTGTGACAAAACCTCCAATCGCCGTAGCTCGTTGTCCTCCTGTTGGAACGGTTCAACCAACGACACGAAATCCACCAAATTCTTTGAGCACCACGTCAGTCCTCGATCATCCTTATGCCGTCGTTGATTCTCCGGTTGCATCAACATCGGCGATGCCAACTCCGATCGCCATTCCTCCAGACGCAAGCACAGATTTTCAATCTCCTCAGCAACAACTGATCCGCGGTCCCTCGAGTCAAGTCCCAGGTCGACAAAATTCTGGCATTACGACggaaaaagtaacaaaatcGCCAAAAGCtaccagagagagaaaagcttcgGTCGATTCCACAAAAGCTGGCAAgagAGGACCAGCAAaatcgaggcaaaaaaattcgGAAATTTTGTCACCGAgcaattcaacaatttttccatgttCGAGCAATTCAAATGCCGAGGCTCGTCTAGTCGAGGCGCCAACTTTTCATCCAAcagaaaaagattttcaagATCCATTGGAATATATTGATAAGATACGATCTATTGCTGAGAAATTTGGTATATGCCGGGTCGTTCCACCTGCTAATTTCAAGCCCGAGTGCAAAGTATCGGACGACATGCGTTTTACTGCCTATAATCAGTACGTTCATCGTATGCTACATCGTTGGGGTCCCAATGTCAAGGAAATGATggctattaaaaaatatcttgccACCCAGAGCATCACTCTGACTCATCCGCcatggATCGGTGGTATGGAAGTCGATTTGCCACATTTGTATCAGACTGTACAGAGTCTGGGTGGACTGAAGGAAgtaatagaaaagaaaaaatggcaaaaagtcGCTGATGGTATGAAAATACCAAAATCAGCACAAGATCGCGTGACAAAACTCGATgatatttattgcaaatatcTTCTACCCTATGATACTCTTTCGCCAGaGGAACGAGGAAAACTTTTCGATGACGTTGAGGAGGAttggaagaagagagaaacaaagacTTTGCAGAGGCTCGACGAGCAATTGAATGagaacgatgatgatgaggatgaCGATAGCTCAGACGAAATTGAAGAATGCATTATTAAgGGACGCAATATGCCATTGAACGCGTTTTATCGTATCGCTCGTAATACTCAACGCATGTGGTTCGGTGAAAATCAACGATCGAACAGCGAAGCCGAGGGCGCATCGGCTGTCGAGGTCGAGAGTGCATTTTGGCGTCACGTTGCCGAGAGAAAACGTCACGTTTGCGTTCATGCTGCTAGCATCGATTCCAGTGGACGAGGCTTTGGTTTTTCTGTGGCTAAAAATAGCCCATTCGCTCGACATCCTTGGAATCTCAAAGTATTGACGAATAATGCTGGCTCGGTACTTCGAGCTTTGGGACCTTTGATGGGCGTTACCGTGCCGACCCTCCACGTTGGAATGCTCTTCAGTGCTTGTTGCTGGTATCGCGATCCGCACGGTTTACCCTGGATCGAGTATCTTCATacaggagcaaaaaaaatttggtacgGCATACCAGACGAgcataataacaattttcgcGAAGCTCTGTCGAAGATGGTGCCGCGttattgcaagaaaaaaacaatatggcTGCCATCCGACACGGCAATGGTACCACCAGAATTATTGGTCAACAATGGCGTACCATTGTGTCGTACCGTTCAAGAACCCGGACAATTTATCGTTGTATTTCCAAAAGCTTTCACATCGAGCATATGCACCGGTTACGTCGTCTCCGAGAGCGTCTACTTTGCTCAACCGGCCTGGCTCGAAAATGCTGAACAAGTATTTAAAGATTTACAGGACAGCTGCGAACCATCGATATTCTCGTTCGAGAGACTTTTATTCAGTACAATTAATGATTCTCGTTCTAACTACGACGTACTGAAGCAGATCATGCCAGCTGTGATGAAAATTCGTGAGCGTGAGCTAGATTATCGCAAACAGTTGGAATATATTGGACTAacgaagaaggaaaaattacCACTGCCAGACACAGGCAAGGGAAAAAAGGGCAAAAGAGTCAAGGAGGAGGATGGCGATTTTGAGTGTGAAACTTGTCGtgcaaatttattcgtatcaTTGGTGAATAATTCTCAGGACGACAGTGTTTATTGTCTTCCTCATGCTCTGCAATTgatcgtaagaaaaaaacaagtaCTGAAAAATTGTACTCTCATGTACACATATACGGAGgaCGAATTGGACGATTTAATACACAAATTGGAGGACAGGATTGAAGCCAAATCGAAGAAAGCTAATCAAATCAGGCAATCTAAATAG
Protein Sequence
MVLGRNDKRKRKEGDLVDLMDPLSESPKRTKVHAQRKFAQGAATVFSPAPVLVKEKEKSKPAMITELISHKRPNTEDFLTFLCFRGTSILPPSLNFFNVGSRKEKLDSKGSGAGKSNAKSSACTKSSSACTKSSSSCTKSSSSTSVSLTIPTKSGSTVNPQSKVATKNTSPVQKRIVTNGVQKTLNKYKNATSTVQALKKKYQEQRLAKQRIKNKFKASCVMRTRSSTERVVLKSVTKLATRQFISRNETKRRHGLRSGGVTDRAKKTNISVAKVTKSIPPRPKKRIIVKDQTSESSDSETASSDDDDAESRRSKNPPQTKKMANKTIQKKICTRSKSEMRRITRSQRESSTTTTTTTSQQASLSRRPSRKTKEAAAVYMEILGRKLVSPDIENDDNISVDSFPELPNARRTAQAENEIRAKSKAAKSKDSKEKDAKSENTKNSEKIKGKQEKPILKSKRTLRVRRYCELDSEDESETSVEPEKTRHLIRRSATKIDKPATRSLRSSSRNQPAKLEIKSTTKSTKDKTFVKRPKPQEKKPESEESEEEETLGNLLNKLKKKREEKVEIRKSSSQIDPPIVVESKVEISSRNERSNEPSQVSDDEESFRGFTEKAISKVLNSCQSHANANLLATEEARGKLEVTKTQETSKTENSAERDEKCVLKLENPVEPLTSLATTFTITKVVQENLPIALPKVENAILKVEDNLEKKCNHKAENEAAIMSIMDMPLTGNHGRKARVNMSTEQIEKWLNESSMARAKQRNKSETESTANFHFEIPQKMKNEVNHLSIPTRIQHLVRPVNVTIPKLIEKAARERAGFQSKIVTSLMQGPRLCLPKPLNIPIPNRNKINADIKEIIKGRSAKVTREISTGEESDSVSKSDQNSIDGSPDKKSTPEKKGIFQQRKTFLPKVKERKITIPSANAFSPENESSVYAFESDTEVPINTPFRRKLKEFGSKSNSGQSETDTRPETEDSQKFSEAGTSSVTELKISSESSKSCSILDTSNDKFVMPKSFGNLSNVQVLPLGKMPTEWGGATCSASIAVQVNFDEQTQQIGQKEQQKLLQSEENYHKNLQFRDNDDGQQKCTEISTQTENTNDNESDNDGHVFYIPLQTVGRNGPNLVQGQQLIQGVAVKLGTEGPNGPNQRVLLRAQLVTKPPIAVARCPPVGTVQPTTRNPPNSLSTTSVLDHPYAVVDSPVASTSAMPTPIAIPPDASTDFQSPQQQLIRGPSSQVPGRQNSGITTEKVTKSPKATRERKASVDSTKAGKRGPAKSRQKNSEILSPSNSTIFPCSSNSNAEARLVEAPTFHPTEKDFQDPLEYIDKIRSIAEKFGICRVVPPANFKPECKVSDDMRFTAYNQYVHRMLHRWGPNVKEMMAIKKYLATQSITLTHPPWIGGMEVDLPHLYQTVQSLGGLKEVIEKKKWQKVADGMKIPKSAQDRVTKLDDIYCKYLLPYDTLSPEERGKLFDDVEEDWKKRETKTLQRLDEQLNENDDDEDDDSSDEIEECIIKGRNMPLNAFYRIARNTQRMWFGENQRSNSEAEGASAVEVESAFWRHVAERKRHVCVHAASIDSSGRGFGFSVAKNSPFARHPWNLKVLTNNAGSVLRALGPLMGVTVPTLHVGMLFSACCWYRDPHGLPWIEYLHTGAKKIWYGIPDEHNNNFREALSKMVPRYCKKKTIWLPSDTAMVPPELLVNNGVPLCRTVQEPGQFIVVFPKAFTSSICTGYVVSESVYFAQPAWLENAEQVFKDLQDSCEPSIFSFERLLFSTINDSRSNYDVLKQIMPAVMKIRERELDYRKQLEYIGLTKKEKLPLPDTGKGKKGKRVKEEDGDFECETCRANLFVSLVNNSQDDSVYCLPHALQLIVRKKQVLKNCTLMYTYTEDELDDLIHKLEDRIEAKSKKANQIRQSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

90% Identity
-
80% Identity
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