Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 1.4e-12 7.9e-10 39.6 0.0 1 43 17 59 17 61 0.95

2 3 2.1 1.3e+03 0.6 0.0 23 30 104 111 102 112 0.87

3 3 3.8 2.2e+03 -0.2 0.1 12 23 137 149 132 150 0.73

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	1.4e-12	7.9e-10	39.6	0.0	1	43	17	59	17	61	0.95
2	3	2.1	1.3e+03	0.6	0.0	23	30	104	111	102	112	0.87
3	3	3.8	2.2e+03	-0.2	0.1	12	23	137	149	132	150	0.73

Coding Sequence: ATGCCCAGAAAATATGTAAGAAAGCATAATACAGCTAGAGGTCTGTGGACTGAAGATAATCTAAAGTTGgctatagaaaaagtgaaaaaaggcGAAATATCCAAAAATGAAGCACAACGGCGTTATGGAATCCCAATTCGTACCTTATCTAGACGACTTCAGACTGGCAATACAATCAAATCTGGATTAGGACCCCAAGCATCACTTGGACTAGAGAATGAAAAACTGCTAGCATCCTACATTCAACGTTTAGCTAGTGCTGGCTTTGCACCTAATAGGAATACTATTCGTTGCCTTGCTTATCAATTTGCTGAGAAGTTTGGTATTCCACACAAATTTGCCAAGGCAAAGGAGAAAGCAGGACAACATTGGCTTACGTCGTTTCTCGAAAGAAACAAAGATATTTCCGTACAGCAAGCAGAAGGTCTTTCGGTGGCAAGAGCCCAAGGTATGAATAGGGGAGAAGTTAATGCGTTTTTTAAGATGTTAGAAGAAGATATGGTTAAAAATGATCTGAGTAATAAACCTCAAAACATTTCCAATGTTGCCGAGAGTGGATTTCAGTTACCAAATAAGCCGGGAAAAGTTTTAACTACCAAAGATGCTAAAGACGTTCACGTGATCCCACCACGTGAGAAGGGAAAAGCTCTACTTGCTTCAACAGTAAAACGCAAACAAGTTACTTGTGTTCTCACATCCCCGCAAAACCTAGATAAAACTGATAAgctgaatttgataaaaagacAAGCTAGAAAATGCAAGATTGCTTGTTCCGGATTAGCAGAAGCATCGTCAACCTCTCAAAAGGATGAGTCTGATCCCATTAAGGATGATAATAATAAGTGCGTTGAGTGTtgggaaaattattttctcacaAAGAAGAAAACTAAGTGGATCAAATGTGATGTATGCCTAAAATGGCTACATGAGACATGTACAATGTACGTCCCCCATTGCAATAATTGTGGGAGGGATATGGTACGAAATCTTAATCAGACCAGATAA
Protein Sequence: MPRKYVRKHNTARGLWTEDNLKLAIEKVKKGEISKNEAQRRYGIPIRTLSRRLQTGNTIKSGLGPQASLGLENEKLLASYIQRLASAGFAPNRNTIRCLAYQFAEKFGIPHKFAKAKEKAGQHWLTSFLERNKDISVQQAEGLSVARAQGMNRGEVNAFFKMLEEDMVKNDLSNKPQNISNVAESGFQLPNKPGKVLTTKDAKDVHVIPPREKGKALLASTVKRKQVTCVLTSPQNLDKTDKLNLIKRQARKCKIACSGLAEASSTSQKDESDPIKDDNNKCVECWENYFLTKKKTKWIKCDVCLKWLHETCTMYVPHCNNCGRDMVRNLNQTR

Sequence clustering based on sequence similarity using MMseqs2