Basic Information

Gene Symbol
JARID2
Assembly
GCA_949715965.1
Location
OX454322.1:48095573-48114978[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 5.1e-22 2.2e-18 67.8 0.0 6 89 1507 1588 1502 1588 0.93

Sequence Information

Coding Sequence
ATGGTGGTGTCCAAGGATGCGAAAAAGAAGCGTAAGGAGTCACCGATGATCGAAACATCTCCGGAGATCCCAAAACGGACTAAAGTCCAGGCACAAAGGAAGTTTGCACAGGGACAAAGCGCCCCATCGGCTTCCTTCACTTCAGGGGTAGCTTCGTCGTCAGGTGCAGCGAGTACATCACAACCCGGGACTCCAATACGGGATAGCCGGGAACCACCCCCAGAGCTAATAACACACAAAAGACCGCGAACAGAGGATTTCCTAACATTCCTCTGCTACAGGGGAACATCAGTCCTTCCCTCCCATCTAGATTTTCTcaaccaaaataaaaattcgtccaACAAAGATGAGGGCAAAGAAGGTGTAGACTCAAAAGAGAAGGAAGAAGCAAAGTCGAGTGCTTCCACAAGTAAGGAGAAGGAAGGGCAACAAAAGGAAGAAACTCCTGAGAAGAAAGATCAAAAGAAGGAGATCATTCCGTTTGCTGTAAGGAAGAGGGCGGAGCAAGTTGCGGAAGGAAATCGAAAACCGAAGGTAGAGAGAGCTATTAGATTGCGGGATAGACCGAACAAGAAAGAAGACTCAAATCGAAGATCTCCGAGGACGAGGGGTGCTAAAAACGACTCAACCAATGATGGTGTAGATGAAGCGTCAGACGCTTCGATGGAGGAAATTGAAGAGGATGAAGAACCTCCAAAGGAACCTGAAGAAAAAGCAAAGAAACCCGTTGTGggtaaaaataaaaggaaattaaatcaaaaaaagaaTGTGGAAGAAAAACCACCGGAGACTGTGGAAGTGGCAGAAAAAGTTAGCTCAGTGCCGTCTAAAGAAATAGTGACTAATAAGAAGTCATTAGATAACAAGGAACCAGAAAAAGATGATACTGAAGAGAAAACCAAAAAGGCTAAGGCTAAGCGTACAGTGACTCCTATCGAGCCATCAGGTCGCATGACTCGGCAAAGAGCTTTCTTTGAACCGGTAAAAGTACCTAGACCCGAAGTAGAAGAAAAGGAAGATATTCCTGAGGAAAATAAAGAAGTCGAAAAGAAAGTTAAGCAGACAGAAGGGAAGAATGAATTCTCTTCTGATGATGAGCAACCACTTGCAAAGACCATTAAATTAACTAAACCTTCACCGAAGAAAACGGCAAAAGGTAAGAAACAAGTAGTTGCCTCTAAAACTAAAGAAAAAGCTAAAGTTGTGTCACCAGACGCAGAGAAGGAATCAAAAAGTCCAATACCTGTAACCAATCCCACACCTGTCACCAGTCCTACAAGACGCAATCTACCGAGGAACAAGCTGACTGAGAAAGAGACTACGGTGGCAGCTGCTGAGCCTGCTGCAAGTCGAAAATCAGATGTTAGTTCCAAGTCCAAGGTTAGTCAAGGTCCAGTAAAAGCCGCTCAAAAGCGACCTGCGAAGGCAATAGAGAAAGACAAGGATAAAGATAAAGAAAAGGATAAGGACAAAGAAAAGGATAAAGATAAAGAAAAAGATAAGGTTGAGGCTCCTTCAGATGATGATACATTTGGTAGAATATCGCCGAAGAGGCGTAGCAAACGAAAGGATAATGAATTAGACCCCTCCCAGCAATCTCAAACGGATGTTAGTGAGAATGACTTGCGGACAGGACGTCCCACAAGAAAAACTAAAGAAGCAGCCACAATATACATGGAGCTTATCGGacagaaattaaatttagacGGATTTGATGACGATGATAGCTCCATGGATAGCTATCCTGAGCTGCCTAATGCTAAGAAAACTCAGAAATTGGAAAATGATCTAAAGAAAAATGTCGAGAAACCGAAACCAAAACCTAAggtgattaaaaaaaatgttaaagtccAAAAGAAACAGGTCGCCAAAAAAAGTGCAGCAAAAGTAGTTGCTGCCGTAAAAGAGGTAGATGAGAAGAAACCATTCGTTAAAGTGGAAGAAAAGCCGACAAAGTTTGAGGAGCAAGAGCAAAAAGGAAAAGATGCTAAACAGAAATCCATTAAAGAGGAAGCTGCAAAGGAGATGCTGAAGAACGAACCGGAAGAGAAgctagaaaaaagttttagtgaTTCGGACGATGAACCTTTGGCTACTAAAGTACAGAAACCTAGCGACAGTGAAACAGTCGAACCAAAAAATGAAATAGGCAAATTGGAGGATAAACCCACTCTTCCAACCATTGCAGAGCCAGCACCGTCAGCAACTCTTAAGCAGGAGAAAACCTCATCAGCGAATAAAGCGACTGGAGGGAATGAGTTAAAGAGCAGTCCACCTGTCCAATCTCCTAATAAGCCGCAGAATAAGGCTGCAGTGAATCGGACTGAAAATAGTAAGCCAACATCTCCGACCACTTTTCCTTCCTTAGCAGATAGATTTCCTTCCCCAAAGATCAATCCAACATTTCTCACTCCAAAATTTGATCGAAACCTAGAAAGGCGTGTTCCCGTCGACTCGGTACAGACTTCATCTTCAACTTCTAAGTTAGGGTTTCTTCCATCTCCATCCCCTTTGAAAAATGATTCCGTTGCAAAATCCTCCTCTCCTAGTAATTCTGCTAACAACTCGAAAAAGGCAGAGCCCGATAATTTTCTTTCAGCCAATCTAATGCCTAGCAAAGAAGAGTCTGGAAAAATTTTTGGGATTGCCAGTGTAAGTTTAGCCCAAAGTTCTGGACCAGACAACACAAAATGCACCTTGGGTAAATGTGGTTCTATACACAAACCAGTTCTGGGTCCTGTAGTACCCACGGAGGCGTATTTGGGTGAACAACTTTCCAGTAAAGAAAGGAGAAAGGCTAAAGTCAATATGACCCATGAACAAATTCAAAAGTGGCTGATCGAATGCTCCTCCAACCCAGACGACATTCTTGATGATTTAGATGATGACTTCGATACACCTGCGAAACCAATGTCTTTCGCGCCAACTCCTCCTCCTATTCAGGATGAAAAGAGTAATTTTAGCTCCTTTTCAAAATCAACTAAGGATAATGTAAAAACCGAAAGTGTTTGGTCGGGTAAAGGTCCATCTTTGAAAGCTACGCCCGTGGTTGTTAGGGAGGAGCAAAAGCGGGTAACTCCTGCTCCAGAATCTGTGAAACATGAAGAAAGCATGGATAAGATTTATGAACCAACACAAAAATCTAAACAAGTAGATTCGGCTAAAAAAGAAAAGGAGCCCGTAGAGCCTAAGAAAAAGGCGAATCCTCCACAGAAAGCAGTGAGGGAAAGTATGAAATCACCTAAGCCGTCTACTTCTTCTACAGCAACATCATCTCCAAAGCATCAAAAGGCTTCTAAGGCGGCTAAGGAAGAGCAAACCAAAAAGGAAGTTGCTAGCAAACAAGCACAAAAGCGTCAGCCTGTTTATAGCTCAAAAATGACTGACTCGAACAAGAGGAAGCCTTCCGCAATTAATTTTTCAGCATTCTCTCCGGAGAACGAAACGAGCGTCTATTCTTTTGATAAAGAGGATGACGCTCCACCCCCTTTGGCTAAACCCTTTCGGCGCCATAGTCGAAGGGAATCCCACAATGAAGACTCCCAGAGTGAAAAACCAAACAACAAAGAAAAAGTGGAAAAGGATAAACTTGCGAAACCGGATAAGGCAGAAAAGTCTAGTAAGGTAGATAAGGGTGCTCCCAAGGACGTTCAACAAAGCAGTATCTCGGTAACGTTAAGTcctgatgataataataaactGGTTAAAGTCAGCCTCGATGGGGAAGGTGCAATAAAGAACACCTCACCAGAGAAGGCACAGGGCAATGAGATGACCAGTTTAGGTGATTCAGACTCTGAAGGGAACACTTTTTACATTCCTCTACACGGAGTTGGACCTGCCGGGGCTGCTGGAGGAAAGTCCTCTGATGTTATTCAGGGCGTGGCTGTGAAGCTGGGAAGGGAGGGACCAGAAGGACCTAACCAGCGAGTGATAATGCATGCCACACTCGTAACGAAGGCTCAGATGGGCTCGAATCCAACTCCCATTCCTGAGTCAATGAATGTACATGAAATTGTTAAAAGTTTGCTTTCAACAACCAAGGATTCTGGTACAGCGATTGGCTCCAAAAGTGTTCCTGTTGGAACCGTACAGCCTCGCTTCAAATCCACTCGGGATCAGCAAGATGCGTCCGGATCAGGTTTAACAAGGGTCAACTCAAATTCTTCCTTATTTTCGGGGTCAAACAAATCCCGGTCAGCATCAGTATCAGTTGGGCCAAAGAAGGTTAAGGATGATACTCCAAttaaaatgtgcaataatacAGCCTTTCCGCGTCGAGATGACCCTCCACAAATGGTGGAAGCGCCAATTTTTCGACCCACAGAGAAGGAGTTCCAAGACCCAATGGAATTTATTGAGAGGATAACTCCAATTGCAGCTAGATTCGGAATTTGCAAAATAATTCCGCCGGCCAGCTTCAAACCTGAGTGCCGTATTTCCGATGATATGCGTTTTACAGCCTACAACCAGTACGTTCATAAAATGTTGCATCGTTGGGGACCAAGTGCTAAGGAGCTAAGTGCAATAAAGAAGTATCTCGCTACCCAGAGCATAGCAATGGCCCATCCTCCATGGATTGGCGGAATGGAGGTCGACCTGCCTCGGCTCTATCACACAGTCCAGGAGCTCGGAGGTCTCAAGGAGGTTATAGAAAAGAAGAAATGGGCTCGTGTGGCAGAGGAGATGTGCATACCaaaactagcccaagataggGTTACAAAGCTAGACGATATCTACTGTAAGTATCTCCTACCTTACGACACACTATCACCGGCCGAACGACAAAAGCTGTTCGATGAGGTCGAGGCCGATTGGGCCAAACGCGAAGCCCGAGCCCGCCGAAATGCAGATCGCTGCGTTAATTTAGAAAGCGTTAGCAACGAAGACGAAGGCTCAAGTGATGAGGACGAAGAGTCCGAGGAAGAGATCGATGGTGTGTCTATGGAATGCATAGTAAAAGGGCGAAACATGCCACTAAgtcaattttttcgaattgcTCGCAATACTATGGCTTTATGGTTTAAAAACACCGAGCCGACAGTTTCGGATATTGAAGCAGAATTTTGGCGGCATGTTGCTGTTAGAGATAGTCATGTTTGCGTACATTCCGGGTCAATTGACTCCAGTGGCTGGGGCTATGGTTTTCCAACTCCGGGACCTAAAGCTAAGGGATCGCCGTGCGCAAGGCATCCATGGAATTTGAAAGTGCTAACGAATAATACAGGATCGGTTTTGCGATCTTTGGGACCTGTAATGGGTGTCACGGTACCAACGCTTCATGTTGGTATGCTATTCAGCGCTTGCTGTTGGTACCGAGATCCTCATGGTTTGTCATGGATCGAATATTTGCATACGGGAGCCAGCAAAATTTGGTACGGCATTCCAGATGAGCAAAGTTCTAGTTTTCGAGCTGCGCTCACAGCTTTAATTCCCACCCATTGCCAGAATAAAACCATTTGGCTTCCATGTGATACTGTAATGGTTCCTCCGCATATGCTCACCGATAGGAATGTCTCCCTTTGTCGAACGGAGCAAAAGCCTGGAGAGTTTGTTGTGGTTTTCCCCCGGGCATACACATCCAGTGTAGCTACAGGATATGTCGTCTCTGAAAGTGTTTATTTCGCTACCAGCTCATGGTTAGATTCAGCAAAGGAGGACTTTAAGGATATTCATGAGAGCTGTGAGCCGGCAATGTTTTCATTAGAGCAACTCCTTTTTGCAATTGCCTCAGATCAGAGGGTTTCACCAGACATTTTGTCACAAATTTTGCCCATGTTATCAGAAGTTTATGAGAAGGAAGTGGCCGCCAGACAGCAATTGAagGCTGCCGGGGTAACTTCAACAGAGAAACTTCTACAGTCAACGGGCAAACCAAAGCAAAAGTTTCAAGTAGCAGAAGTTTATGAATGTGATTTATGTAGAGCCAACCTATACATATCGATGGTGCGGATAGAGGAGGGCAGCATATACTGTTTGCAACATGcgttaaaaaatatcaataatggTAACATTCAGGCGAAACAGTGTACACTCATATTTAAGTACACTGTTGATGAAATTGAAGAAATgtcgaaaaaattaaaggatcGTCTCGAACAGAAAAAGACGCCCGCAATTACTACTGGTAAAAAGGGACATGCCTCGAAATAG
Protein Sequence
MVVSKDAKKKRKESPMIETSPEIPKRTKVQAQRKFAQGQSAPSASFTSGVASSSGAASTSQPGTPIRDSREPPPELITHKRPRTEDFLTFLCYRGTSVLPSHLDFLNQNKNSSNKDEGKEGVDSKEKEEAKSSASTSKEKEGQQKEETPEKKDQKKEIIPFAVRKRAEQVAEGNRKPKVERAIRLRDRPNKKEDSNRRSPRTRGAKNDSTNDGVDEASDASMEEIEEDEEPPKEPEEKAKKPVVGKNKRKLNQKKNVEEKPPETVEVAEKVSSVPSKEIVTNKKSLDNKEPEKDDTEEKTKKAKAKRTVTPIEPSGRMTRQRAFFEPVKVPRPEVEEKEDIPEENKEVEKKVKQTEGKNEFSSDDEQPLAKTIKLTKPSPKKTAKGKKQVVASKTKEKAKVVSPDAEKESKSPIPVTNPTPVTSPTRRNLPRNKLTEKETTVAAAEPAASRKSDVSSKSKVSQGPVKAAQKRPAKAIEKDKDKDKEKDKDKEKDKDKEKDKVEAPSDDDTFGRISPKRRSKRKDNELDPSQQSQTDVSENDLRTGRPTRKTKEAATIYMELIGQKLNLDGFDDDDSSMDSYPELPNAKKTQKLENDLKKNVEKPKPKPKVIKKNVKVQKKQVAKKSAAKVVAAVKEVDEKKPFVKVEEKPTKFEEQEQKGKDAKQKSIKEEAAKEMLKNEPEEKLEKSFSDSDDEPLATKVQKPSDSETVEPKNEIGKLEDKPTLPTIAEPAPSATLKQEKTSSANKATGGNELKSSPPVQSPNKPQNKAAVNRTENSKPTSPTTFPSLADRFPSPKINPTFLTPKFDRNLERRVPVDSVQTSSSTSKLGFLPSPSPLKNDSVAKSSSPSNSANNSKKAEPDNFLSANLMPSKEESGKIFGIASVSLAQSSGPDNTKCTLGKCGSIHKPVLGPVVPTEAYLGEQLSSKERRKAKVNMTHEQIQKWLIECSSNPDDILDDLDDDFDTPAKPMSFAPTPPPIQDEKSNFSSFSKSTKDNVKTESVWSGKGPSLKATPVVVREEQKRVTPAPESVKHEESMDKIYEPTQKSKQVDSAKKEKEPVEPKKKANPPQKAVRESMKSPKPSTSSTATSSPKHQKASKAAKEEQTKKEVASKQAQKRQPVYSSKMTDSNKRKPSAINFSAFSPENETSVYSFDKEDDAPPPLAKPFRRHSRRESHNEDSQSEKPNNKEKVEKDKLAKPDKAEKSSKVDKGAPKDVQQSSISVTLSPDDNNKLVKVSLDGEGAIKNTSPEKAQGNEMTSLGDSDSEGNTFYIPLHGVGPAGAAGGKSSDVIQGVAVKLGREGPEGPNQRVIMHATLVTKAQMGSNPTPIPESMNVHEIVKSLLSTTKDSGTAIGSKSVPVGTVQPRFKSTRDQQDASGSGLTRVNSNSSLFSGSNKSRSASVSVGPKKVKDDTPIKMCNNTAFPRRDDPPQMVEAPIFRPTEKEFQDPMEFIERITPIAARFGICKIIPPASFKPECRISDDMRFTAYNQYVHKMLHRWGPSAKELSAIKKYLATQSIAMAHPPWIGGMEVDLPRLYHTVQELGGLKEVIEKKKWARVAEEMCIPKLAQDRVTKLDDIYCKYLLPYDTLSPAERQKLFDEVEADWAKREARARRNADRCVNLESVSNEDEGSSDEDEESEEEIDGVSMECIVKGRNMPLSQFFRIARNTMALWFKNTEPTVSDIEAEFWRHVAVRDSHVCVHSGSIDSSGWGYGFPTPGPKAKGSPCARHPWNLKVLTNNTGSVLRSLGPVMGVTVPTLHVGMLFSACCWYRDPHGLSWIEYLHTGASKIWYGIPDEQSSSFRAALTALIPTHCQNKTIWLPCDTVMVPPHMLTDRNVSLCRTEQKPGEFVVVFPRAYTSSVATGYVVSESVYFATSSWLDSAKEDFKDIHESCEPAMFSLEQLLFAIASDQRVSPDILSQILPMLSEVYEKEVAARQQLKAAGVTSTEKLLQSTGKPKQKFQVAEVYECDLCRANLYISMVRIEEGSIYCLQHALKNINNGNIQAKQCTLIFKYTVDEIEEMSKKLKDRLEQKKTPAITTGKKGHASK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01049436;
90% Identity
iTF_00936338;
80% Identity
-