Dtit000110.1
Basic Information
- Insect
- Dynastes tityus
- Gene Symbol
- -
- Assembly
- GCA_029618875.2
- Location
- JAROYD020000001.1:1099304-1100847[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00024 0.028 16.5 0.2 2 23 195 216 194 216 0.97 2 11 0.088 10 8.4 0.2 1 21 222 242 222 243 0.95 3 11 7.5e-06 0.00087 21.2 4.0 1 23 250 272 250 272 0.97 4 11 6.9e-07 8.1e-05 24.5 4.6 2 23 279 300 278 300 0.97 5 11 0.00027 0.032 16.3 6.4 1 23 305 327 305 327 0.98 6 11 6.4e-07 7.5e-05 24.6 2.6 2 23 334 355 334 355 0.98 7 11 6.5e-05 0.0076 18.3 1.8 1 23 360 382 360 382 0.98 8 11 4.2e-08 4.9e-06 28.3 1.6 2 23 389 410 388 410 0.97 9 11 0.00051 0.06 15.4 0.8 1 23 415 437 415 437 0.98 10 11 3.8e-08 4.4e-06 28.5 1.4 2 23 444 465 443 465 0.97 11 11 1.4e-05 0.0017 20.3 5.1 1 23 470 492 470 492 0.98
Sequence Information
- Coding Sequence
- ATGTcacttgaaataataataaaggaggAAAGCGATTTGAATGACTTTTCAGCCGATATCGTATTTGATTTAGCCGACTTCTGTAGAACATGTTTAGGACGTGAGTATTCCTTGACACCAACAAATTCTTTGGATAGCGACTCCATAAAATTCTGCGACAAATTGGTGGCGTGCGTTTCGGGAATGAAGTGGGCGAAGGAGGGTGTGCCTTCTTTTATTTGTGGAATATGTATAGAAAAACTAAGAATTGCCTATGATTTCCAAACAGTTTGTTTACGATCAGATCAAGCACTTCAATTACAGCGGGAAGCgaatgaaatacaaaattctattcATGTAAGTCCGGATCCTACGACACCAGCCAGCTTAGCAGGATGTGATGAAACAATAGGGAAAATTATTTCGAGTCTTAAATATGAGGAAATGGAAACGCAGATTTTACCTCGGTGTGCCCCTGTTACCTTAGCTACAATGCAATTAGAATCTACGCAGACAGTACGTAATCCTTGTGAACACAGCTACCAGGTTTGCAAGACGGAATTATGTGAAAATTTTCAAACGCTCGTAAGTGAGAAGAGTTTACAATGTTCGGTTTGCCTTAAACAGTTTACGATAACAGCCGAGCTAACCGCGCATATGAGAATTCATGCTGAAGAAAAGTGTTACGTTTGTGTCTCTTGCAAGAAGGGGTTTCTCAATGAATCCGACTTGCTAGCGCATATATGTCTACGTGCAGGGGAGGGAGTATTTGCATGTAGTTATtgcgataagaaatttattagtaGACATACGTTGAACTCCCACTTAAAAACTCATACAGGCAATAAGCACTGGCAATGTCATATCTGTAACAAATCTTACACGAAATCTTTCCAACTTACACGGCACATGAAGACGCACACTGGAGAGAAATTTTCCTGTACATTATGTTGTAAAAGGTTCACACAATCTTCCTCTTTAACAACGCATATGAAAAGACACACCGGCAATAACCTTAGGCAATGTCAGATCTGCGACAGAAAATTTATACAATCTTCGCATCTTTCAGCACACATGAAGACACATACTGGAGAAAAGtattcctgtaaattatgtgataaacaATTTACGTGGTCAACCTCTTTAACagtacatatgaaaagacatactGGCGATAAACTTTGGCAGTGTAAAATCTGTAACAAATCATATACAAGATCTTCTAATCTTTCAGAACACATGAAGacacatactggagagaagtattcctgtaaattatgtgataaacaGTTTACGTGGTCAACCGCTTTAAGTAATCATTTGAAAATACATAGTGGCAATAAACCTTGGCCATGTAAGATCTGCAACACATCATTTACACAATCTTCTTACCTTACGCGACACATGAAGACACATACTCCtaagaagttttcctgtaaattgtGTGATAAAAAGTATTCACGATCTGACTGTTTAAATgaacatatgaaaaaacatactTGTGAAAAGTCTTAg
- Protein Sequence
- MSLEIIIKEESDLNDFSADIVFDLADFCRTCLGREYSLTPTNSLDSDSIKFCDKLVACVSGMKWAKEGVPSFICGICIEKLRIAYDFQTVCLRSDQALQLQREANEIQNSIHVSPDPTTPASLAGCDETIGKIISSLKYEEMETQILPRCAPVTLATMQLESTQTVRNPCEHSYQVCKTELCENFQTLVSEKSLQCSVCLKQFTITAELTAHMRIHAEEKCYVCVSCKKGFLNESDLLAHICLRAGEGVFACSYCDKKFISRHTLNSHLKTHTGNKHWQCHICNKSYTKSFQLTRHMKTHTGEKFSCTLCCKRFTQSSSLTTHMKRHTGNNLRQCQICDRKFIQSSHLSAHMKTHTGEKYSCKLCDKQFTWSTSLTVHMKRHTGDKLWQCKICNKSYTRSSNLSEHMKTHTGEKYSCKLCDKQFTWSTALSNHLKIHSGNKPWPCKICNTSFTQSSYLTRHMKTHTPKKFSCKLCDKKYSRSDCLNEHMKKHTCEKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -