Dtit012829.1
Basic Information
- Insect
- Dynastes tityus
- Gene Symbol
- -
- Assembly
- GCA_029618875.2
- Location
- JAROYD020000003.1:3465884-3467666[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.4 4e+02 3.4 0.0 1 16 222 237 222 238 0.91 2 13 0.012 1.4 11.1 1.9 1 17 250 266 250 272 0.91 3 13 0.021 2.5 10.3 0.5 7 23 284 300 284 300 0.96 4 13 2.4e-05 0.0028 19.6 1.9 1 23 305 327 305 327 0.98 5 13 1.9e-07 2.2e-05 26.3 2.4 1 23 332 354 332 354 0.98 6 13 1.2e-06 0.00014 23.8 1.6 1 23 359 381 359 381 0.98 7 13 2.4e-06 0.00028 22.8 1.4 1 23 386 408 386 408 0.98 8 13 8.1e-06 0.00094 21.1 1.9 1 23 413 435 413 435 0.98 9 13 4.5e-06 0.00053 21.9 2.4 1 23 440 462 440 462 0.98 10 13 6.4e-06 0.00075 21.4 2.3 1 23 467 489 467 489 0.98 11 13 2e-06 0.00023 23.0 1.9 2 23 495 516 494 516 0.97 12 13 1.1e-05 0.0012 20.7 1.1 2 23 522 543 521 543 0.97 13 13 4.4e-07 5.2e-05 25.1 5.8 2 23 550 571 549 571 0.97
Sequence Information
- Coding Sequence
- ATGTCgttggaaattttatttaaggaAGAACACGATCTAAATGACCCTTCGATCGATACTGTATTTGGTCTAGCTGACTGCTGTAGAACATGTTTACGACAGGAGTGTTCTTTGACACCAACAAATTCCTCGGATACCGACTCCGTTAAATTCTGTGATAAACTAGCAGCCTGCGTATCAGAAATGaaatggGCAAAGAAGGGTGTGCCTTCCTTTATTTGTGGACTATGTATAGAGAAACTAAGAATTGCCTACGATTTCCAAACAGTTTGTTTGCAATCAGATCAAACACTTCAATTACAAAGGGAAACAAGTGAAATACAAAGTTCTATGAGTGCAACTCTGGATCCCACAACAACAACCGACCTAACTGAATGTGATAAAGCAATagagaatgttatttttttaagtgtaaAATCAGAGGAAACGCAAATCATGCCTTTACCACAGAGTGCCTCAGTTACCCTAGCTGCAGCACAGTTAGAAGCTGTGCAGACATTAGCTAATCCTTGTAACAATATCTGCCAGCTTTGCGGAAAAGAACTATCTGAACATATCCAAAGGCACACAGATAATAAATGTTGTCATTGTTTGGTATGCGTTAAACAGTTTACAATGACTGTGCCAACTGCGCAAATGCAAATTCCTACCGAGAAGAAGCTACATGCTTGTAATGTTTGTGAGAATAGGTATATTAATAAAGTCAACTTGTTAGGGCTTATGCGTTTACGTACAAGAAAAAGAACATTTGCATGTAGTTATTGCCATAGAAAGTTTACTAGAAAATTTCTGTTGAATTCCCGCTTAAAAACTCATATTAGTGATAAATTTTGGCGACGTCGGATCGGTAATAAATCATACACAAAATCTCCTCAACTTACACAGCACATGAAGACACATACTAGAAAGAAGTTTTcatgtaaattatgtgataaaaagtttactTGGTCTGACTCTTTAAGagtacatatgaaaagacatactggagagagattttcctgtaaattatgtgataaaacaTTCACTCGGTCTGATTCTTTaagtgtacatatgaaaaaacatgctggagagaagttttcctgtaaattatgtgataaaaagtttacaGCACCATCCACTTTAaaagtacatatgaaaagacatactggagagaatttttcctgtaaattatgtgttAAAACGTTCACTCGGTCTGCCGGTTTAagagtacatatgaaaaaacatactggagagaagttcTCCTGTAAATTTTGTGATAAAAACTTTGCATATCGTACCGGTTTAAATGCACACATGAAAagacatactggagagaagttttcctgtaaattatgtgttAAAACGTTCACTCGGTCTGACTCGTTAAGAGgacatatgaaaaaacatactggagagaaattttcctgtaaattttGTGATAAAAAGTTTGCATATCGTACCGGTTTAAATGCacatatgaaaagacatactggagagaagctttcctgtaaattatgtgataaaaagtttacaTCGCCTTCCACTTTAAGTATgcatatgaaaaaacatactggagagaagcttacctgtaaattatgtgataaaaagtttgcATCCCGTACCGGTTTATATGCacatatgaaaagacatactGGCGATAAACTCTGGCAATGTCCAACGTGTAATAAATCGTATACACAATCTCATCACCTTACACGACACATGAAGACACATGCTGGAAAGAAGATCTCCTga
- Protein Sequence
- MSLEILFKEEHDLNDPSIDTVFGLADCCRTCLRQECSLTPTNSSDTDSVKFCDKLAACVSEMKWAKKGVPSFICGLCIEKLRIAYDFQTVCLQSDQTLQLQRETSEIQSSMSATLDPTTTTDLTECDKAIENVIFLSVKSEETQIMPLPQSASVTLAAAQLEAVQTLANPCNNICQLCGKELSEHIQRHTDNKCCHCLVCVKQFTMTVPTAQMQIPTEKKLHACNVCENRYINKVNLLGLMRLRTRKRTFACSYCHRKFTRKFLLNSRLKTHISDKFWRRRIGNKSYTKSPQLTQHMKTHTRKKFSCKLCDKKFTWSDSLRVHMKRHTGERFSCKLCDKTFTRSDSLSVHMKKHAGEKFSCKLCDKKFTAPSTLKVHMKRHTGENFSCKLCVKTFTRSAGLRVHMKKHTGEKFSCKFCDKNFAYRTGLNAHMKRHTGEKFSCKLCVKTFTRSDSLRGHMKKHTGEKFSCKFCDKKFAYRTGLNAHMKRHTGEKLSCKLCDKKFTSPSTLSMHMKKHTGEKLTCKLCDKKFASRTGLYAHMKRHTGDKLWQCPTCNKSYTQSHHLTRHMKTHAGKKIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00626396;
- 90% Identity
- iTF_00626396;
- 80% Identity
- iTF_00627412;