Dtit012840.1
Basic Information
- Insect
- Dynastes tityus
- Gene Symbol
- -
- Assembly
- GCA_029618875.2
- Location
- JAROYD020000003.1:3524285-3525843[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.1 2.5e+02 4.1 5.7 5 23 181 199 174 199 0.79 2 12 9.4e-05 0.011 17.8 0.7 2 23 205 226 204 226 0.97 3 12 1e-06 0.00012 23.9 1.8 1 23 231 253 231 253 0.98 4 12 1.3e-06 0.00015 23.6 1.3 1 23 258 280 258 280 0.98 5 12 1.4e-07 1.7e-05 26.6 0.7 1 23 285 307 285 307 0.98 6 12 1e-05 0.0012 20.8 4.3 1 23 312 334 312 334 0.98 7 12 1.1e-05 0.0013 20.7 3.1 1 23 339 361 339 361 0.97 8 12 1.2e-07 1.4e-05 26.9 1.5 1 23 366 388 366 388 0.98 9 12 1.8e-06 0.00021 23.2 3.8 1 23 392 414 392 414 0.98 10 12 4.1e-07 4.8e-05 25.2 2.0 2 23 420 441 419 441 0.97 11 12 1.9e-05 0.0022 20.0 4.7 1 23 446 468 446 468 0.98 12 12 9.9e-07 0.00011 24.0 3.0 1 23 473 495 473 495 0.97
Sequence Information
- Coding Sequence
- ATGTCaattaaaattctatttaaagAAGAAACCGATCTAATTGATCCTGCAATCGATACCGCATTTGATTTAGCTAACTGCTGTAGAACATGTTTACGACATGAGTGTTTTTTAACACCCACAAATTCCTTGGATAGCGACTCCATAAAATTCTGTGACAAATTGGCGGCCTGTGTATCGGGAATGAAATGGGCAAAGGAGGGTGTGCCTTCTTTTATTTGCGGACTATGTATAGAAAAACTAAGAATTGCTTACGATTTCCAAACAGTTTGTTTACAATCAGAACAAACACTTCAATTACAAGGGGATGCAAGTGAAATACGGAGTTCTAGGGATGTAATTCTGGATTCTACGACAACAACTGATTTGCCTGGATGTGATAAAACAATAGAGAATATTATTTTAAGTGTAAAAGCAGAGGAAACGCAAATCCAGCCTTTACCTCAGTGTGCCCCATTTACCTCAGCTACAACACATTTAGAAGCTATGCAGACATCAGATAATTCTCGTAAAGATGGCTGCCAGGTTTGTGGAAGAGAATTATGTGAACATATTCAAACGAAATCTTCTCACCTTGCACGGCACATGATGACACATACTAGAGAGAAGCTTTCCTGcgaattatgtgataaaaagtttactTGGTCTGCCTCTTTAagagtacacatgaaaaagcatactggagaaaagttttcttgtaaattatgtgataaaaagttcgCACGTCCGTACTCTTTAAGTCtacatatgaaaagacatactggagagaagttttctTGTAAACTATGTGATCAAAAGTTCACACAGCCTTCCTCTTTaagtgtacatatgaaaaaCCATACCGGAGAGAAATTTTCCTGTAagttatgtgataaaaagttcgCACAACCTTCCTCTTTACGTGCACATATGGAAAAACACGTTGGaaagaagttttcctgtaaattatgtgataaaaagtttacaGCATCTTCCTCTTTAtgtgtacatatgaaaaaacataccGGGGAGAAGTTTTGCTGTAAGTTATGCGATAAAAAATTCGCACAACCTTTCTCTTTACGTGTACATATGGAGAAACACGCCGGGGAGAAGTTtccctgtaaattatgtgataaaaactTTACATATAGTTCCGATTTAAGAGcacatatgaaaaaacatactggggagttttcctgtaaattttgTGATAAAAGGTTCGTACAACCTTCTTCTTTACATGTACATATGAAGAAACATACTGAGGAGGTGCTTTCCTGTAAATTTTGTGATAAAAGGTTTACACAGTCTTCCTATTTACGTGTACATATGAAAATACATACTGGGGAGAAGTTTTCGtgtaaattatgtaataaaaagtTTTCAGCGTCTTCCTCTTTATGTGTACATATGAAGAAACATGCCGGAGAGAAGTTTTTCTGTCAATTATGCGATAAAAAGTTCACACAATCTTCCGGATTAAGTAGACATATGAAAAGACATGCTGGGATGCCTTTGAAAATTTAG
- Protein Sequence
- MSIKILFKEETDLIDPAIDTAFDLANCCRTCLRHECFLTPTNSLDSDSIKFCDKLAACVSGMKWAKEGVPSFICGLCIEKLRIAYDFQTVCLQSEQTLQLQGDASEIRSSRDVILDSTTTTDLPGCDKTIENIILSVKAEETQIQPLPQCAPFTSATTHLEAMQTSDNSRKDGCQVCGRELCEHIQTKSSHLARHMMTHTREKLSCELCDKKFTWSASLRVHMKKHTGEKFSCKLCDKKFARPYSLSLHMKRHTGEKFSCKLCDQKFTQPSSLSVHMKNHTGEKFSCKLCDKKFAQPSSLRAHMEKHVGKKFSCKLCDKKFTASSSLCVHMKKHTGEKFCCKLCDKKFAQPFSLRVHMEKHAGEKFPCKLCDKNFTYSSDLRAHMKKHTGEFSCKFCDKRFVQPSSLHVHMKKHTEEVLSCKFCDKRFTQSSYLRVHMKIHTGEKFSCKLCNKKFSASSSLCVHMKKHAGEKFFCQLCDKKFTQSSGLSRHMKRHAGMPLKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00626387;
- 90% Identity
- iTF_00626387;
- 80% Identity
- -