Dtit012815.2
Basic Information
- Insect
- Dynastes tityus
- Gene Symbol
- -
- Assembly
- GCA_029618875.2
- Location
- JAROYD020000003.1:3385067-3386739[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.9 3.4e+02 3.6 0.1 8 23 173 188 169 188 0.86 2 13 7.9e-06 0.00093 21.1 1.6 2 23 215 236 214 236 0.97 3 13 2.1e-07 2.5e-05 26.1 1.6 1 23 241 263 241 263 0.98 4 13 6.9e-05 0.008 18.2 4.5 1 23 267 289 267 289 0.98 5 13 2.8e-06 0.00033 22.6 0.3 1 23 294 316 294 316 0.98 6 13 1.4e-05 0.0017 20.3 7.0 1 23 321 343 321 343 0.98 7 13 5.7e-05 0.0066 18.5 5.6 1 23 348 370 348 370 0.98 8 13 4.7e-06 0.00055 21.8 4.0 2 23 376 397 375 397 0.97 9 13 2.2e-05 0.0026 19.8 1.9 2 23 403 424 402 424 0.97 10 13 2.2e-07 2.5e-05 26.1 1.8 1 23 429 451 429 451 0.97 11 13 5.5e-07 6.4e-05 24.8 2.8 1 23 456 478 456 478 0.98 12 13 7.5e-05 0.0087 18.1 6.8 2 23 484 505 483 505 0.96 13 13 4.3e-07 5e-05 25.1 4.3 2 23 512 533 511 533 0.97
Sequence Information
- Coding Sequence
- ATGTCGACTGAAATTCTTTTCAAGGAAGAAAGCGATCTAATTGACCCTTTATTTGATACCGTATTTGATCTAGCTGTCTGCTGTAGAACATGTTTACAACATGAGTGTTCCTTGATACCAACAAATTCCTTGGATTACGACTCCATAAAATTCTGTAACAAATTAGCGGCTTGTGTATCAGGACTGaaatggGCAAAAGAGGGGGTGCCTTCTTTTATTTGTGGACTATGTATAGAAAAACTAAGAATTGCCTACGATTTCCAAACAGTTTGTTTGCAATCAGATCAAGCATTTCAATTAAGAAGGGAAGCAAGTGAAAGACAAAGTTCTAGGAGTATAACTCCAGATCCTACGACAACAACCAACTTCGTTGGATGTGATGAAACGATAGGGGAAGTTATCTTAGGTATAAAAGCAGAGGAAACACAAATCCAGCCTTTACCTCAGTGTGCCCCAATTATTTCAGCTGCAGCACAATTAGAAACTATGCAGACGTCAGATAACCTTTGTAAAGATAAACAGTTTATGATGACAGCTGAGCTTACTTCGCATATGCAAATTCATACTGAGGAAACACTGCATGCGTACACAAAATCTTCTCAACTCACACGGCAGATGAAGACACATACTAGAGAGAagatttcttgtaaattatgtgataaaaagttcacaCTGTCTTCTTCTTTAagtgtacacatgaaaaaacatattggagagaagttttcctgtaaactATGTGATAAAACGTTTGCACAGTCTTCTTCTTTAagtgtacacatgaaaaaacatactggagagttttgctgtaaattttgtgataaaaagttcacaGGGTCGTACGCTTTAAGTGTGCATATGAAAAGgcatactggagagaagttttcctgtaaattatgcgaTAAAGAGTTCACACTGCCTGGTTCTTTAAATGTACATATGAAAATACATACTGGAGTGAAGTTTtgctgtaaattatgtgataaaaagttcacaCACTCATCCTCCTTAAGTGTACATATGAAAAGtcatactggagagaagttttcctgtaaattatgtgataaagaGTTCACACTGTCTTGTTATTTAAGAAGacatatgaaaagacatactGTAGAGaagatttcctgtaaatattGTGATAAAAAGTTCGCACAGCGATGCTCTTTAAGGGCacatatgaaaagacatactggagagaagatttcctgtaaattatgtgataaaatgTTCGCGCAGCCATGCTCTTTAAGAGTGCATCTGAAgaaacatactggagagaagttttcctgtaaactatgtgataaaaagttcacaCAGTCGTCCTCTTTAACTGTACATATGAAAGGtcatactggagagaagttcTCCTGTAAACTGTGCAATAAAAAGTTCATACAGTCTTCTTCTTTAAGagtacatatgaaaagacatactGTAGAGAAGTGTTCTtgtaaattatgtaataaaaagtTCACACATCCCTACTATTTAAGTGtacatatgaaaagacatacCGGCGAAAAACTTTGGCGATGTCCAACCTGTAACAAATCATATACACAATCTTTTCACCTTACACGGCACATGAAGACACATACCGAAGAGAAACttattatgtga
- Protein Sequence
- MSTEILFKEESDLIDPLFDTVFDLAVCCRTCLQHECSLIPTNSLDYDSIKFCNKLAACVSGLKWAKEGVPSFICGLCIEKLRIAYDFQTVCLQSDQAFQLRREASERQSSRSITPDPTTTTNFVGCDETIGEVILGIKAEETQIQPLPQCAPIISAAAQLETMQTSDNLCKDKQFMMTAELTSHMQIHTEETLHAYTKSSQLTRQMKTHTREKISCKLCDKKFTLSSSLSVHMKKHIGEKFSCKLCDKTFAQSSSLSVHMKKHTGEFCCKFCDKKFTGSYALSVHMKRHTGEKFSCKLCDKEFTLPGSLNVHMKIHTGVKFCCKLCDKKFTHSSSLSVHMKSHTGEKFSCKLCDKEFTLSCYLRRHMKRHTVEKISCKYCDKKFAQRCSLRAHMKRHTGEKISCKLCDKMFAQPCSLRVHLKKHTGEKFSCKLCDKKFTQSSSLTVHMKGHTGEKFSCKLCNKKFIQSSSLRVHMKRHTVEKCSCKLCNKKFTHPYYLSVHMKRHTGEKLWRCPTCNKSYTQSFHLTRHMKTHTEEKLIM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -