Dtit011303.1
Basic Information
- Insect
- Dynastes tityus
- Gene Symbol
- -
- Assembly
- GCA_029618875.2
- Location
- JAROYD020000002.1:66108640-66110370[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 6.5e-07 7.6e-05 24.6 2.4 1 23 221 243 221 243 0.98 2 12 1.2e-05 0.0014 20.6 7.1 1 23 249 271 249 271 0.99 3 12 0.00015 0.018 17.1 0.3 1 23 277 299 277 299 0.99 4 12 4.5e-06 0.00053 21.9 0.5 1 23 305 327 305 327 0.98 5 12 0.00042 0.049 15.7 1.3 1 23 333 355 333 355 0.97 6 12 3.3e-07 3.8e-05 25.5 3.5 2 23 362 383 361 383 0.97 7 12 2.1e-05 0.0024 19.8 4.2 1 23 388 410 388 410 0.98 8 12 2.8e-06 0.00032 22.6 2.6 1 23 416 438 416 438 0.99 9 12 1.1e-06 0.00013 23.8 0.5 1 23 443 465 443 465 0.99 10 12 4.7e-07 5.5e-05 25.0 3.0 2 23 472 493 471 493 0.97 11 12 3.1e-07 3.7e-05 25.6 1.1 3 23 501 521 499 521 0.98 12 12 8.3e-07 9.7e-05 24.2 0.6 1 23 527 549 527 549 0.99
Sequence Information
- Coding Sequence
- atgaatagcTTGCTCAATTTATCCGAATGTTGCCGTGCTTGTTTAAGAGTAGAATGTTCTTTAAGTTCCACAGGTGCAACTGACACCGACAATATTAAAGTAGGGGAGAAATTAAATAGTTGTGTGTCGGAAATAtGCTGGTTAAAAGAAGACTTCACACAGTTAATATGTTCTAATTGCATAGATAAGTTGAGGATAGCCTATGACTTTCGAATACTCTGTCTACAGTCAGACAATACCTTACAGCAATATCTAAATCAACAGAAAGTTACAACCACCGTACAAACTTATACTGATGTAACGAATTTTGAGTTAACTAATGTAATATCTTTACAAGCAAATAGTATCAATTCCGATAAAACATTAGATCAACAATCAGACTTAATTAGTTTGAAACATTTCTTGGATAACGAAGAAGTGCTAGTAAGATCGAGCAATGCAATAAATGAGCTACAAAATTCTAGGAGTGCGACTCCAGATTCTGTAGCAACAACTAGCTTGGCAAAATGTGATAAACCAGTTTGGAAAGTTAATGTAAGTACGAAATCCGTAAAAACACAAACGCAGCACTTACCTCAGTATCCAACACTTACCCCAGCTGCAGCACGATTAGAAGCTACACAGATTAAACCAATAATTGTTTTAGACAATCCTTATAAATACTGCTGCCaggtttgtggaaaaaaatatgCGAAAAATGCAAATCTTAAGATTCATATGAGGACTCATACAGGTGAAAAGCCTTATGAATGTAGATATTgcgaaaagaaattttatcattCATCTCATTTACGTGAACATATTCGAAGGCACACAGGCGAAAAGCCTTTTCAATGTTTGGTATGCCTTAAACGGTTTACCATAACAGCTGAGCTAACTGTGCATATGCGAATTCATACTGGGGAAAAGCCATATGCTTGTAATTTTTGTGAGAAGAGATATATTAAAGCATCCGATTTGCAAGTGCATATGCGTTCACATACAGGAGAGAAACCGTTCGCTTGTAGTTATtgtgataaaaagtttactAGTGGATATATCTTGAATTCCCACTTAAAGACTCATACTGGTGATAGACCTTGGAAATGTCAAGTCTGCAGCAAATCATTTACACAATCTTCTCATCTTACAGTGCACATGAAGAGACACACGGGAGaaaagttttcctgtaaattctGTAGGCAGGAATTTACACATTCTTCTCAATTAACAGTCCACATGAGAGAACATACAGGTAAACAACCATACAAATGCACTCTCTGCGACAAAGTGTGCAATTATGCCTCGGAATTGCAAACGCATATGATGAAACATACTGGTGagaaatttacttgtttaacatgtgataaaaagtttgcAACAGCTGCATATTTACAAGAACATATCCGGACACACACCGGAGAAAATTTACTCAATTGTTCACATTGTGATCGTACTTTTACACGGGCAACTTACTTAGAGAAACATATACGGACGCATACTGGCGAAAAACCTTTTGGCTGTGAACTTTGTGGTAAAAAGTTTACACAATCTTCCTCATTAaatgtacatatgaaaaaacataccGATGAAAAGCCATATACTTGTACTATTTGTAATAGGGGTTTCATCACTAGTTCATATCTTGCAGTTCATTTACGTAAACATAAAAAGTATACAAGTCTTTAA
- Protein Sequence
- MNSLLNLSECCRACLRVECSLSSTGATDTDNIKVGEKLNSCVSEICWLKEDFTQLICSNCIDKLRIAYDFRILCLQSDNTLQQYLNQQKVTTTVQTYTDVTNFELTNVISLQANSINSDKTLDQQSDLISLKHFLDNEEVLVRSSNAINELQNSRSATPDSVATTSLAKCDKPVWKVNVSTKSVKTQTQHLPQYPTLTPAAARLEATQIKPIIVLDNPYKYCCQVCGKKYAKNANLKIHMRTHTGEKPYECRYCEKKFYHSSHLREHIRRHTGEKPFQCLVCLKRFTITAELTVHMRIHTGEKPYACNFCEKRYIKASDLQVHMRSHTGEKPFACSYCDKKFTSGYILNSHLKTHTGDRPWKCQVCSKSFTQSSHLTVHMKRHTGEKFSCKFCRQEFTHSSQLTVHMREHTGKQPYKCTLCDKVCNYASELQTHMMKHTGEKFTCLTCDKKFATAAYLQEHIRTHTGENLLNCSHCDRTFTRATYLEKHIRTHTGEKPFGCELCGKKFTQSSSLNVHMKKHTDEKPYTCTICNRGFITSSYLAVHLRKHKKYTSL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00466604;
- 90% Identity
- iTF_01499047; iTF_01121015; iTF_00956456;
- 80% Identity
- -