Dtit042757.1
Basic Information
- Insect
- Dynastes tityus
- Gene Symbol
- -
- Assembly
- GCA_029618875.2
- Location
- JAROYD020000011.1:332170-333899[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.2e-05 0.0049 18.9 0.3 1 23 201 223 201 223 0.97 2 13 0.00024 0.027 16.5 2.2 1 23 229 251 229 251 0.95 3 13 9.9e-07 0.00012 24.0 3.6 2 23 258 279 257 279 0.97 4 13 8.6e-06 0.001 21.0 3.0 1 23 284 306 284 306 0.98 5 13 2.2e-06 0.00026 22.9 1.7 1 23 312 334 312 334 0.99 6 13 0.0016 0.19 13.9 4.7 1 23 339 361 339 361 0.98 7 13 1.2e-06 0.00014 23.8 4.4 1 23 366 388 366 388 0.98 8 13 1e-07 1.2e-05 27.1 4.5 2 23 395 416 394 416 0.98 9 13 2.7e-05 0.0032 19.5 4.1 1 23 421 443 421 443 0.97 10 13 5.1e-06 0.0006 21.7 3.2 1 23 449 471 449 471 0.99 11 13 1.2e-05 0.0014 20.6 2.1 2 23 477 498 476 498 0.97 12 13 1.5e-07 1.8e-05 26.5 1.6 1 23 504 526 504 526 0.98 13 13 4.6e-07 5.4e-05 25.0 1.6 3 23 534 554 532 554 0.98
Sequence Information
- Coding Sequence
- atgtcaattgaaattatatttgagGAGGAAAGCAAGCTAAATGACCCCTCAGCTGATACAGTATTTGATTTAGCCGACTGCTGTAGAACATGTTTACAACTTGAGTGTTCCTTGACACCAACAAATTCCTCAGATAGCGATTCCATAAAATTCTGCGACAAATTGGCGGCCTGCGTATCAGGAATGAACTGGGCAAAGGAGGGCGTGCCTTCTTTTATTTGTGGCATGTGTATAGAAAAACTAAGAATTGCGTATGATTTCCAAACACTTTGTTTGCAATCagatcaaacatttcaattacaaTTGGAAGCAAATCAGATCCAAAGTTTTAGGAGTACAACTCCAGATCCTTCAACAACAACTGGGTTAGCAGGATGCGATGAATCAATAGGAAAAGTTATTTCAAGTATAAAATCTGAGGAAACGCAACTGCAGGATTTATCTCAGTATGCCCCACTTACCTCGGCTGTAGAACAATTGGAAGCTAAGCAAATAGTAGATAATCGACCTAAAGACGGTTGCCAGGTATGGGGGAAAGGATTACATGAGCATATTGGAACCCACACAGGCAAGAAGCGTTTTCATACGAAGGAAAAGCGGTATGCTTGTAATTTTTGTGAGAAAAGATATATTCGTGCATACGAGTTGCAAGTACATATAAGTTCCCACACAGGGGAAAGATCATTTGCATGTAGTTGCTGTGATAAGAAGTTTGCTAGAAAATATCTGTTGAATGCACACTTAGAAACTCATTCTGGCGATAGACGTTGGCGATGTGGAATCTGTAATAAATCATATACAAGATCTTCCCACCTTACATATCACATGAAAAAACACACCGGAGAGaagttttcttgtaaattatgtGGACAGAAATTTACACATTACAGTCAATTAGTAGTCCACAGGCGGGTACACACGGGAAAACAACCGTACAAGTGCACTCTCTGCGACAAAGTATGCAGTTACGCCGTGCAATTGGAAACACATATGATGACTCATTCTGGTGAGAAATTTACATGTTCAACATGCGATAAAGAGTTTATTAGTAGATATACGTTAAACTGCCACCTAAAAACtcatactggagagaagttttcctgtaaattatgtgataagaAGTTTGCACACTCTTCCACTTTAACTATGCATATGAGAAGACATACTGGCGATAAACTTTCACAATGTAAAATCTGTAACAAATCATTTACAAGATCTTCTCATCTTAAAGAGCACATGATGAGACACGCCGGAGAGAAGTTCCCCTGTAAAATATGTGGACAGAAATTTAGACATTGTTCTCAATTGGCCGTTCACAAGCGGGAACACACGGGAAAACAACCGTACAAATGCAGTCTCTGCGACAAAGTATGCAGCTTTGCCCGGGATTTGGAAAGACATATGAAGAAACATACTAGTGAGATATTGACTTGTTCAACgtgtgataaaaagttttctAACAGACGTATGTTGAACTCCCACTTAAAAATCCACACtagtaaaaatatattcaattgtTCGTATTGTGATCGTATTTTTATACGAAAAGACAACTTAAAGGCACATACAAGGACGCACACTGGTGAAAAACCCTTTGGCTGTGAACTTTGtggtaaaaaatttaaacagtcTTCTTCTTTAAATACTCATATGAAAAGTCATAGTGCTGAAAAGCCATGA
- Protein Sequence
- MSIEIIFEEESKLNDPSADTVFDLADCCRTCLQLECSLTPTNSSDSDSIKFCDKLAACVSGMNWAKEGVPSFICGMCIEKLRIAYDFQTLCLQSDQTFQLQLEANQIQSFRSTTPDPSTTTGLAGCDESIGKVISSIKSEETQLQDLSQYAPLTSAVEQLEAKQIVDNRPKDGCQVWGKGLHEHIGTHTGKKRFHTKEKRYACNFCEKRYIRAYELQVHISSHTGERSFACSCCDKKFARKYLLNAHLETHSGDRRWRCGICNKSYTRSSHLTYHMKKHTGEKFSCKLCGQKFTHYSQLVVHRRVHTGKQPYKCTLCDKVCSYAVQLETHMMTHSGEKFTCSTCDKEFISRYTLNCHLKTHTGEKFSCKLCDKKFAHSSTLTMHMRRHTGDKLSQCKICNKSFTRSSHLKEHMMRHAGEKFPCKICGQKFRHCSQLAVHKREHTGKQPYKCSLCDKVCSFARDLERHMKKHTSEILTCSTCDKKFSNRRMLNSHLKIHTSKNIFNCSYCDRIFIRKDNLKAHTRTHTGEKPFGCELCGKKFKQSSSLNTHMKSHSAEKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -