Dtit012814.3
Basic Information
- Insect
- Dynastes tityus
- Gene Symbol
- -
- Assembly
- GCA_029618875.2
- Location
- JAROYD020000003.1:3378278-3380250[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 8.5 1e+03 2.2 0.1 14 23 176 185 167 185 0.90 2 18 7.6 8.8e+02 2.3 1.3 1 17 191 207 191 208 0.90 3 18 0.11 13 8.1 1.9 9 23 213 227 212 227 0.93 4 18 8.6e-06 0.001 21.0 0.4 2 23 232 253 231 253 0.97 5 18 4.4e-06 0.00051 22.0 6.0 2 23 260 281 259 281 0.97 6 18 4.4e-05 0.0051 18.8 4.6 1 23 286 308 286 308 0.98 7 18 2.8e-06 0.00033 22.5 0.6 1 23 313 335 313 335 0.98 8 18 4.1e-07 4.8e-05 25.2 2.7 1 23 340 362 340 362 0.98 9 18 1.9e-07 2.2e-05 26.3 2.8 1 23 367 389 367 389 0.98 10 18 3.7e-06 0.00043 22.2 4.4 2 23 396 417 395 417 0.97 11 18 6.8e-05 0.008 18.2 4.8 1 23 422 444 422 444 0.98 12 18 1.8e-05 0.0021 20.0 3.5 1 23 449 471 449 471 0.98 13 18 3.7e-06 0.00044 22.2 1.2 2 23 477 498 476 498 0.97 14 18 6.9e-08 8e-06 27.6 0.6 1 23 503 525 503 525 0.98 15 18 4.7e-07 5.4e-05 25.0 2.6 1 23 530 552 530 552 0.98 16 18 2.8e-06 0.00033 22.6 2.3 1 23 557 579 557 579 0.98 17 18 6.1e-07 7.1e-05 24.6 4.4 2 23 586 607 585 607 0.97 18 18 7.7e-06 0.0009 21.2 3.8 2 23 613 634 612 634 0.97
Sequence Information
- Coding Sequence
- ATGTCGATTGAAATTCTATTTAAGGAAGAAACCGATCTAATTGACCCTCCAATTGATACCGTACTAGATTTAGCTAACTGCTGTAGAACATGTTTACAACACGAGTGTCCCTTGACACCAACAAATTCCTTGGATTGCGACTCCATAAAATTCTGTGACAAATTAACGGCCTGTGTATCAGGAATGaaatggGCAAAGGAGGGTGTGCCTTGTTTTATTTGTGAAATATGTATAGAAAAACTAAGAATTGCCTACGATTTCCAAAAAGTTTGTTTACAATCAGATCAAGCATTTCAATTAAAAGGGGAAGCAAGTGAAAGGCTAAGTTCTACGAGTGCAACACTAGATCCTACGACAACAACTGACTTAGCTGGATACGATGAACCAATAGGGAAAGTTATAAGCATAAAAGTGGAAGAAACACAAATCCAGCCTCAGTGTGCCTCAGTTACCTCAGCTGCAGCACAATTAGAACCTATGCAGACATCAGATAATCCGTGTAAAGATGGCTGCCAGGTTTGTGCAAAAGATTTATGTAAACATATTCAAAGACATATAGGCAAGAATTGTTTTCAATGTTCGGTATGCCTTAAACTGTGTACGACGACAACTCAACTTACTGAGGAAACGCTGCATGCATACACAAAATCTTCTCAGCTTACACAGCACATGAAGACGCATATTAGAAagatttcctgtgaattatgtgataaaaagtttatAGAGTCTTCCTCTTTAAGTGCacatatgaaaagacatactGGCAATAAATTCTGGCGATGTCAGACCTGTCACAAATCATATACACAATCTTCACACCTTATACAGCACATGAAGACACATGCTGGAGAGgaattttcctgtaaattatgtgctAAAAAGTTCACACGGTCGTACgctttatgtatacatatgaaAAAGCATACTGGAGAGAAATTTTCCTGTAAACTATGCGATAAAAAGTTCACACTGCCTGGTGCTTTAaatgtacatatgaaaaaacatactggagagacgttttcctgtaaattatgtgataaaaagttcacaCAGTCGTCCTCGTTAAGTGTACATATGAAAAGGCATACGGGAGAGaagttttcttgtaaattatgCGATAAAAAGTTCACACGCTCTTCCTCTTTAAGCGCacatatgaaaagacatactGGCGATAAACTCTGGCAGTGTCAGACCTGTTACAAATCATATACACAATCTTCACACCTTACACAGCACATGAAGACACATACTGGAGAGaaattttcctgtaaattatgtgctAAAAAGTTCACACGGTCATACACATTACATGTACATATGAAAAGtcatactggagagaagttttctTGTAAACTATGTGATAAAAACTTCACACTGCCTTGTTCTTTAAATATGCATATGAGGACACATACTGGAGAGAaaatttcctgtaaattatgtgataaaaggTTCACACGGTCATACTCCTTAGGTGTACATATGAAAAGtcatactggagagaagttttcctgtgaactatgtgataaaaagttcacaCAGCCTGATGCTTTAAaagtacatatgaaaacacatactggaaagaagttttcctgtcaattatgtgataaaaagttcacaCGGTCGTCCTCTTTAAGCGTACATATGAAAAGGCATACTGGGgtgaagttttcctgtaaattgtgtgataaaaagttcacaCGCTCTTCCTCTGTAAATGCACATTTGAAAAGACATACTGGCGATAAACTCTGGCGATGTCAAACCTGTCACAAATCATATACACAATCTTCAGACCTTACACGACACATGAAAACACATACTGGAGAGAaagtttcctgtaaattatgtgataagaAGTTCACACGGTCATACACATTACATGTACATATGAAAAGTCATACTGGAGAGGTTTTCCTGTGA
- Protein Sequence
- MSIEILFKEETDLIDPPIDTVLDLANCCRTCLQHECPLTPTNSLDCDSIKFCDKLTACVSGMKWAKEGVPCFICEICIEKLRIAYDFQKVCLQSDQAFQLKGEASERLSSTSATLDPTTTTDLAGYDEPIGKVISIKVEETQIQPQCASVTSAAAQLEPMQTSDNPCKDGCQVCAKDLCKHIQRHIGKNCFQCSVCLKLCTTTTQLTEETLHAYTKSSQLTQHMKTHIRKISCELCDKKFIESSSLSAHMKRHTGNKFWRCQTCHKSYTQSSHLIQHMKTHAGEEFSCKLCAKKFTRSYALCIHMKKHTGEKFSCKLCDKKFTLPGALNVHMKKHTGETFSCKLCDKKFTQSSSLSVHMKRHTGEKFSCKLCDKKFTRSSSLSAHMKRHTGDKLWQCQTCYKSYTQSSHLTQHMKTHTGEKFSCKLCAKKFTRSYTLHVHMKSHTGEKFSCKLCDKNFTLPCSLNMHMRTHTGEKISCKLCDKRFTRSYSLGVHMKSHTGEKFSCELCDKKFTQPDALKVHMKTHTGKKFSCQLCDKKFTRSSSLSVHMKRHTGVKFSCKLCDKKFTRSSSVNAHLKRHTGDKLWRCQTCHKSYTQSSDLTRHMKTHTGEKVSCKLCDKKFTRSYTLHVHMKSHTGEVFL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -