Dtit012848.3
Basic Information
- Insect
- Dynastes tityus
- Gene Symbol
- -
- Assembly
- GCA_029618875.2
- Location
- JAROYD020000003.1:3545559-3547816[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 8.5e-05 0.0099 17.9 0.1 1 23 194 216 194 216 0.99 2 19 0.018 2.1 10.6 0.1 1 23 222 244 222 244 0.96 3 19 3.3e-05 0.0039 19.2 2.9 1 23 250 272 250 272 0.97 4 19 7.4e-05 0.0087 18.1 6.8 1 23 304 326 304 326 0.98 5 19 4.4e-06 0.00051 21.9 2.6 1 23 331 353 331 353 0.98 6 19 2.1e-07 2.5e-05 26.1 3.2 1 23 358 380 358 380 0.98 7 19 0.00016 0.019 17.0 1.6 2 23 386 407 385 407 0.97 8 19 4.8e-05 0.0056 18.7 1.2 1 23 412 434 412 434 0.98 9 19 1.4e-06 0.00016 23.5 0.2 1 23 439 461 439 461 0.98 10 19 7.3e-06 0.00085 21.2 4.7 1 23 466 488 466 488 0.98 11 19 1.1e-05 0.0013 20.7 0.9 2 23 494 515 493 515 0.97 12 19 0.00022 0.026 16.6 0.3 1 23 520 542 520 542 0.98 13 19 8.1e-06 0.00094 21.1 0.5 2 23 548 569 547 569 0.97 14 19 9.8e-07 0.00011 24.0 2.1 1 23 574 596 574 596 0.98 15 19 4.6e-06 0.00054 21.9 4.6 1 23 601 623 601 623 0.98 16 19 5.7e-07 6.6e-05 24.7 2.8 1 23 628 650 628 650 0.98 17 19 3.1e-06 0.00036 22.4 2.5 1 23 655 677 655 677 0.98 18 19 5.9e-07 6.9e-05 24.7 0.6 1 23 682 704 682 704 0.98 19 19 4.3e-07 5.1e-05 25.1 5.3 1 23 709 731 709 731 0.98
Sequence Information
- Coding Sequence
- atgTCGATGGAAATTCTACTTAAGGAAGAAACCGATCTAAATGACCCATCATTCGATGCCATATTTGATTTAGTTGACTGCTGTAGAACATGCTTGCGACATGAGTGTTCCCTGACACCAACAAATTCCTTGGATAGtgatttcataaaattttgtgACAAATTAGTAGCTTGCGTATCAGGAATGaaatggGCAGAGGAGGGTgtaccttcttttatttgtggACTATGTATAGAAAAACTAAGAATTGCCTACGACTTCCGAACAGTTTGTTTACAATCAGACTACATGCTTCAATTTCAAGGGCAAGCAAGTGAAATACGAAGTTCTAGAAGTGTAACTCCGTAtcctacgacaacaacaactgaCCTAGCCGATCGTGATGAAACAGTGAAGAATGTTATTTTAAGTGTAAAAGCAGAGGAAACACAAATCCAGTCTTCACCTCAGTGTGCCCCGGTTATCGTTGCAGGGCAATCAGAAGCTATGCAGACATCAGAAAACCCTTGTAAAGATGACTGCCAGATTCGCGGAAAAGAATTGCATGAAGGTATTGAAAGACCCAAAGGCAAGAAGAGTTTTCAATGTTTGATATGCCTTGAACAGTTTACAACAACAGCTGAGCTAGCTGCACATATGCGAATTCACACTGCGGAAAAGCCGCATGCTTGTAATGTTTGCGAGAATAGGTATATTGATGAAGTCGACTTGCTAGTGCATATGTCTTCACacacagaaaaaagaaaatttgcatGTAGTTATTGTTATAAAAAGTTTGCTAGAAAATTTCTGTTGAATTCCCACTTAAAAACTCATTCTGACGGTAAACTTTGGCGATATCGGATCTCTAACAAATCATACACAAAATCTTCTCAGCTTACACGGGGTATAAAAACACATGCTAGAAAGTTTTCCTGTAagttatgtgataaaaagtacACACGCTCTCACCATTTAGATGtacatatgaaaagacatattggggagaagttttcctgtaaattatgtgagaAGAAGTTTGCACACCCCTCCTCTTTAAGTGtacatatgaaaagacatactggagagaagttttcctgtaaattatgtgataaaaagttcacaCAGTCTTCTTCTTTAcgtgtacatatgaaaaaacatactggagagaaggtttcctgtaaattatgcgaTAAAAAGTTAGCACGGTCGCGCTCTTTGAATATgcatatgaaaaaacatactggagagatgttttcctgtaaattatgcgaTAAAAAGTTCACATGGTCTTCCTCTTTAAGTATACATATGAAAATACATAatggagagaagttttcctgtagCTTATGTGATGAAAAGTTCATACGGCCTTCCGCTTTAAATGTACATATGAAAATACATACTGGACAGAAGTTTTcatgtaaattatgtgataaaaagttcacGCATTCTTCCTATTTAGATGtacatatgaaaagacataATGGAGAgaagatttcctgtaaattatgcgaTAAAAAGTTTGCATATCGTACCGGTTTAAATGCGcatatgaaaagacatactggagagaagttttcctgtaaattatgcgaTAAAAAGTTCGGAGAGCCGAACGCTTTGGGGAtacatatgaaaagacataATGGAGAgaagatttcctgtaaattatgcgaTAAAAAGTTTGCATATCGTGCCGGTTTAAATGCGcatatgaaaagacatactggagagatgttttcttgtaaattatgtgataagaAGTTCACACACCCCGCCactttaaatatacatatgaaAATACATACTGGAGAAAAGTTTtgctgtaaattatgtgataaaaagttcagACAACCGACATCTTTAAGGGTACATATGAAAAGTCATAGTGGAGAGaagttttcttgtaaattatgtgataagaAGTTCACACACCCCTCCTCTTTATATGCGCATATGAAAgtacatactggagagaagttctcctgtaaattatgtgataaagaGTTCAGACAATCGAAATCTTTAAGTAtacatatgaaaagacataGTGGGGAGaagttttcttgtaaattatgtgataaggAGTTCGCACAGCCCTCCTCTTTaagtgtacatatgaaaaaacattaTGGGGAGaggttttcctgtaaattatgtgataaaacaTTCACTCGGTCTCACTCATTAAAGGcacatatgaaaaaacataccggatag
- Protein Sequence
- MSMEILLKEETDLNDPSFDAIFDLVDCCRTCLRHECSLTPTNSLDSDFIKFCDKLVACVSGMKWAEEGVPSFICGLCIEKLRIAYDFRTVCLQSDYMLQFQGQASEIRSSRSVTPYPTTTTTDLADRDETVKNVILSVKAEETQIQSSPQCAPVIVAGQSEAMQTSENPCKDDCQIRGKELHEGIERPKGKKSFQCLICLEQFTTTAELAAHMRIHTAEKPHACNVCENRYIDEVDLLVHMSSHTEKRKFACSYCYKKFARKFLLNSHLKTHSDGKLWRYRISNKSYTKSSQLTRGIKTHARKFSCKLCDKKYTRSHHLDVHMKRHIGEKFSCKLCEKKFAHPSSLSVHMKRHTGEKFSCKLCDKKFTQSSSLRVHMKKHTGEKVSCKLCDKKLARSRSLNMHMKKHTGEMFSCKLCDKKFTWSSSLSIHMKIHNGEKFSCSLCDEKFIRPSALNVHMKIHTGQKFSCKLCDKKFTHSSYLDVHMKRHNGEKISCKLCDKKFAYRTGLNAHMKRHTGEKFSCKLCDKKFGEPNALGIHMKRHNGEKISCKLCDKKFAYRAGLNAHMKRHTGEMFSCKLCDKKFTHPATLNIHMKIHTGEKFCCKLCDKKFRQPTSLRVHMKSHSGEKFSCKLCDKKFTHPSSLYAHMKVHTGEKFSCKLCDKEFRQSKSLSIHMKRHSGEKFSCKLCDKEFAQPSSLSVHMKKHYGERFSCKLCDKTFTRSHSLKAHMKKHTG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -