Dtit042764.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dynastes tityus
Gene Symbol
-
Assembly
GCA_029618875.2
Location
JAROYD020000011.1:376551-378850[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 0.00019 0.023 16.8 0.2 2 23 195 216 194 216 0.97
2 20 0.00021 0.025 16.6 1.4 1 23 222 244 222 244 0.99
3 20 1.2e-06 0.00014 23.7 1.8 1 23 250 272 250 272 0.97
4 20 0.00016 0.019 17.0 2.5 2 23 279 300 278 300 0.97
5 20 2.6e-05 0.003 19.5 5.2 1 23 305 327 305 327 0.98
6 20 1.8e-07 2.1e-05 26.3 2.6 2 23 334 355 333 355 0.97
7 20 9.4e-07 0.00011 24.1 2.2 1 23 363 385 363 385 0.99
8 20 2.2e-06 0.00026 22.9 1.7 2 23 391 412 390 412 0.97
9 20 0.00037 0.043 15.9 3.1 2 23 418 439 417 439 0.97
10 20 1.6e-06 0.00019 23.3 4.9 1 23 445 467 445 467 0.98
11 20 1.3e-08 1.5e-06 29.9 1.0 1 23 473 495 473 495 0.97
12 20 4.2e-05 0.0049 18.9 0.4 2 23 502 523 501 523 0.97
13 20 5.6e-06 0.00066 21.6 1.8 1 23 528 550 528 550 0.98
14 20 9.4e-06 0.0011 20.9 0.7 1 23 556 579 556 579 0.95
15 20 2.8e-05 0.0033 19.4 1.8 2 23 585 606 584 606 0.96
16 20 1.9e-06 0.00022 23.1 1.8 1 23 612 634 612 634 0.98
17 20 5.6e-07 6.5e-05 24.8 0.3 1 23 640 662 640 662 0.97
18 20 5.6e-07 6.6e-05 24.8 0.5 2 23 669 690 668 690 0.97
19 20 8.5e-06 0.00099 21.1 0.4 1 23 695 717 695 717 0.98
20 20 9.9e-06 0.0012 20.8 4.5 1 23 723 745 723 745 0.99

Sequence Information

Coding Sequence
ATgtcaattgaaattaaatttgaggaGGAAAACGATCTAAATGACCCCTTAGCCGATACGGTATATGATTTAGCTAACTGCTGTAGGACATGTTTACAAGCCAAGTGCTCCTTGACACTAACAAATTCCTTGGATAGCGATTCCATAAAATTCTGTGACAAGTTAGCGGCGTGTGTATCAGGAATGATGTGGCCGAAGGAGCTTGTGCCTTCTTTTATTTGTGGAGTATGTATAGAAAAACTAAGAATTGCCTATGATTTCCAAACAGTTTGTTTGCAATCAGATCAATTATTTCGATTGCAAAAGGAAGCAAATGAAATACAACATTCTATAAATGCAACTCTGGATTCCACGACAACAACTAGCTTAGCAGGATGCAATGAAACAATAgagaaagtttttttaaatataaaatctgaGGAAGTGCAAGTGCAGCCTTTACCTCAATGTGGACCGGGTACCTCGGCTGCAGTACAACTGGAAACTGTGCAGGCACTAGATGATCCAGGTAAACATGGCTGCCAGCTATGCGGAAAAGAATTATGTGAACATATTCGAAGGCACATAGGTCAGGAGTGTTTGCAATGTTCGGTATGCCTTAAACAGTTTACGACAACAGCCGAGTTAATTGCACATACGCGAATTCACTGTGAGGTTAAATGGTATACTTGTAATTTTTGTGAGAAGAGGTATATGAATGAATCCGATTTCCTAGAGCATATACGTTCACATGATGAAGAGAGACTGTTCGCGTGTAGCTATTGTGATAAAAAGtttagtagcaaatatttgttgaACTCGCACTTAAAAATTCATACAGGTGGTAAACTTTGGCGATGTCAAATCTGtaacaaattgtataaaaagCCATCTCACCTTTCGTTGCATTTGAAGACACATACTGTaaagaagttttcctgtaaattatgtcaTAAAACATTTAAGCTATCTCGTTCTTTAAATGCacatatgaaaagacatactGGCGGTAAACTTTGGCGATGTCAAATTTGTGACAAGTCGTATATAAGATCTTCTCACCTTCTGCGACACATGAAGACACATACAGGAGAGAAGAAGCAACCCTATAAGTGTAATCTCTGCGATAAAGTGTGCAGTTCTGCTGGGCACTTGGAAGCGCATATGATGAAACATACCGGTGAGAAAGTGACTTGTTCAATATGCGATAAAAAATTTAGTAGCAGATATAAGCTGAACAGCCATTTAAATACTCACACTGGAGATAAATTGACTTGTTCAACGTGCGGTAAAAGCTTCGCTAGCAGATATTTGTTGAACTGCCACTTAAAAACCCATACCggcgaaaatattttcaattgctCGCAATGTGATCGTAGCTTTACACAAGCATGCAACTTGAAAAAACATTTGAGGACGCACACCGGTGAGAAACCCTTTGCTTGTGAACTTTGTGGTAAGAAGTTTACacaatcttcaaatttaaatgtGCATATGAGAAGACATACTGGCGATAATCTTTCGCGATGTCAAATCTGCGATAAATCATATTTAAACCCTTCTCTGCTTGCACGCCACATGATGAAACATACCGGAGAAAAGTTTTCCTGCAATATATGCGAAGAGGAATTTAAACATTCTTCTCAATTATCACTCCATATGCGGGAACATACGGGAAAACAACCGTATAAGTGCACCATCTGCGACAAGGTATGCAATTATGCGGCGCAGTTGCAAACGCATATGATAGAAGAACATAGTGGTGAGAAATTGACTTGTTCAACATGCGGTGAAAAGTTTACCAGCAAATATAAGTTGAACTCCCACTTAAAACTTCATACCGGCGAAAATATATTCAATTGCTCGTATTGCGATCGTACTTTTACACGTGGAAGCACATTAAAGATACATGTGAGGACGCACACTGGTGAGAAACCCTTTGTCTGTGAACTTTGTGGTAAAAAGTTTACAGTATCTTCCTCTTTAAATGTGCATATGAAAGCGCATACTGGCGACAAACTTTGGCGATGTCAAATCTGTAACAAACCATATACGCAATCGTCTAACCTTGCACAGCACATGATGAAACATACCGGAGAGAAGTTCTCCTGTAAATTGTGCGGAGAGGAATTTAAAGGTTCTTCTCAATTATCACTCCATATGCGGGGACACACGGGAAAACAACCATACAAGTGCAGTCAGTGCGACAAAGTGTGCAGGTATCCCCGGGATTTGCGAACGCATATGAAGAAACATACCGGTGAGAAATAA
Protein Sequence
MSIEIKFEEENDLNDPLADTVYDLANCCRTCLQAKCSLTLTNSLDSDSIKFCDKLAACVSGMMWPKELVPSFICGVCIEKLRIAYDFQTVCLQSDQLFRLQKEANEIQHSINATLDSTTTTSLAGCNETIEKVFLNIKSEEVQVQPLPQCGPGTSAAVQLETVQALDDPGKHGCQLCGKELCEHIRRHIGQECLQCSVCLKQFTTTAELIAHTRIHCEVKWYTCNFCEKRYMNESDFLEHIRSHDEERLFACSYCDKKFSSKYLLNSHLKIHTGGKLWRCQICNKLYKKPSHLSLHLKTHTVKKFSCKLCHKTFKLSRSLNAHMKRHTGGKLWRCQICDKSYIRSSHLLRHMKTHTGEKKQPYKCNLCDKVCSSAGHLEAHMMKHTGEKVTCSICDKKFSSRYKLNSHLNTHTGDKLTCSTCGKSFASRYLLNCHLKTHTGENIFNCSQCDRSFTQACNLKKHLRTHTGEKPFACELCGKKFTQSSNLNVHMRRHTGDNLSRCQICDKSYLNPSLLARHMMKHTGEKFSCNICEEEFKHSSQLSLHMREHTGKQPYKCTICDKVCNYAAQLQTHMIEEHSGEKLTCSTCGEKFTSKYKLNSHLKLHTGENIFNCSYCDRTFTRGSTLKIHVRTHTGEKPFVCELCGKKFTVSSSLNVHMKAHTGDKLWRCQICNKPYTQSSNLAQHMMKHTGEKFSCKLCGEEFKGSSQLSLHMRGHTGKQPYKCSQCDKVCRYPRDLRTHMKKHTGEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-