Basic Information

Insect: Dynastes hyllus
Gene Symbol: pol
Assembly: GCA_029619255.2
Location: JAROYC020000003.1:2502338-2517850[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 8.5e-06 0.0011 20.7 0.4 2 23 167 188 166 188 0.97

2 8 4.3e-06 0.00053 21.6 6.0 2 23 195 216 194 216 0.97

3 8 0.00011 0.014 17.2 1.7 5 23 386 404 379 404 0.88

4 8 8.7 1.1e+03 1.8 0.1 5 15 414 424 413 425 0.87

5 8 1.7e-06 0.00022 22.9 0.4 2 23 427 448 426 448 0.97

6 8 7.6e-08 9.5e-06 27.2 1.8 1 23 453 475 453 475 0.98

7 8 2.9e-06 0.00036 22.2 1.2 1 23 480 502 480 502 0.97

8 8 2.8e-06 0.00034 22.3 1.3 2 23 507 528 506 528 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	8.5e-06	0.0011	20.7	0.4	2	23	167	188	166	188	0.97
2	8	4.3e-06	0.00053	21.6	6.0	2	23	195	216	194	216	0.97
3	8	0.00011	0.014	17.2	1.7	5	23	386	404	379	404	0.88
4	8	8.7	1.1e+03	1.8	0.1	5	15	414	424	413	425	0.87
5	8	1.7e-06	0.00022	22.9	0.4	2	23	427	448	426	448	0.97
6	8	7.6e-08	9.5e-06	27.2	1.8	1	23	453	475	453	475	0.98
7	8	2.9e-06	0.00036	22.2	1.2	1	23	480	502	480	502	0.97
8	8	2.8e-06	0.00034	22.3	1.3	2	23	507	528	506	528	0.96

Sequence Information

Coding Sequence: ATGTCGATTGAAATTCTATTTAAGGAAGAAAGCGATCTAAATGACCCTTCAATTGATACCGTACCAGAATTAGCTAACTGCTGTAGAGAGGAACATCTCCATAAAAAATTCTGTGACAAATTAACGGCCTGTCAAGGAATGaaatggGCAAAGGAGGATCGACAATATAGCAGCTTAGCTGGATACGATGAACCAATAGGGAAAGTTATAAGTATAAAAGTGGAAGAAACACAAATCCAGCCTCAGTGTGCCTCAGTTACCTCAGCTGCAGCACAATTAGAACCTATGCAGACATCAGATAATCCGTGTAAAGATGGCTGCCAGGTTTGTGGAAAAGATTTATGTAAACATATTCAAAGACTTATGGGCAAGAATTGTTTTCAATGTTCGGTATGCCTTAAGCAGGTTGTGACGGAAAATAACTCAACACTGAGGAAGCTGGCATACACAAAAATCTTCTCAGCTTACCTTTATGAGAAGACGCATATTAGAAagatttcctgtgaattatgtgataaaaagtttataGAGTCTTCCTCTTTAAGTGCACATATGAAAAGACATACTGGCAATAAATTCTGGCGATGTCAGACCTGTCACAAATCATATACACAATCTTCACACCTTATACAGCACATGAAGACACATGCTGGAGAGgaattttcctCTGTCTGCTGTAGAACATGTTTACAACATGAGTGTTCCTTGACACCAACAAACTCCTCAGATTATGACTCCATAAAATTCTGTGACAAATTAGCGGCCTGTGTATCAGGAGTGaaatgggCAAAGGAGGGTGTGCCTTCTTTTATTTGTGGTATATGTATAGAAAAACTAAGAACTGCCTATGATTTCCAAACAGTTTGTTTACAATCAGATCAAGCACTTCAATTAAGAGGGGAAGCAAATGAAAGACGAAGTTCTAGGAGTATAATTCGGGATCCTACGACAACAATCAACTTCGTTGGATGTGATGAAACAATGgggaaagttattttaaatataaaagcaGAGGAAACACAAATCCAGCCTCTACCTCAGTGTGCCCCAGTTACTTCAGCTGCAGCACAATTAGAAGCTATGCAGACATCAGATAACCCTCCTAAAGATAGCTGCCAGGTTTGCAGAAACGAACTATGTGAACATATTGAAAGAGATTGCGATAAAAAGTTTACTACAAAATATCTGTTGAACTACCACATAAAAAGTCATACTCGTGATAAACTTTGGCAACGTCGGATCTGTAACAAATCATACACAAAATCTTCTCAGAACGTTTCCTGtgaattatgtgataaaaagttcgCACAGCCTTCCTCTTTAAAagttcatttgaaaaaacataCTGGAGAAAAGTTCTCCTGCAAATTATGTGACAAAAAGTTTACGGATCCTTCCTCTTTAAGGGTACATATGAAGAAACATACCGGCGAGAAGTTCTCCTGTAAATTATGCGATAAAAAGTTCACACAGCCGTACTCTTGGAGAGTGCATATGAAAGGACATACTGGAGAGATTTCCTGCAAATTGTGTGATAAAAAGTTCACACAGACTTCCTCTTTGAGAGTACATATGAAAggacatactggagagaagttttcctCTGAGGCTCATGCGGATTGCCTCGAGACGGTTTTCCGAGAACCGGAGGAAGATGGAGATGACGAGGAGTTTGACAGGCGTGTCCCGACCTCCTTACGCGGTCTGGATTGCGCGGATGCGGAGGAACTGCCACTTGCCAGTACAAACGAAATTAAGGGCATCATAGACAGAACCAAAAATGGGAAAGCTCCAGGCTCGGACGAAATAACCAACCGCATGTTGAAAAACCTTCCACCTGCGGTCATAAACGCCGATAAGCCTTCTCTCCTGTCTTTTGAAGATAGAGGAGGCCGTAATACTCGATTGAGAGAAGATATCTCTATTATTAATCCGATACCACACGAACAGTTCGGTTTTAGATCTGGGTTATCTACGGACTTCCAGCTGTTACGTTTCACGGATTTTATCAGAGACGCTATGGAGAGAAGGGAAACGACGCAGGCAATATTCCTAGACATACAGAAAGCCTTCGATTCGGTCTGGCATCAGGGACTGCTGTTCAAGATCTCGCAGCTTGGTGACAATGTTAACATGGTGAGATTGTTGCGTAGTTACTTGCGAAGAAGGAACTGTGTTAGGATGGGCGAAGTGAGGTCTTCTTCCAGGCCGATCTTCGCGGGAGTGCCTCAAGGGTTGCTGTTGGCCCCAGAATTGTATATTGTGATATTCCTAAAGAAACGGATGTTCAACTTGCAATTTAAGCGGAAGATACAGTTTTATATTCGTCTTCACGCGACGAAAGATTGA
Protein Sequence: MSIEILFKEESDLNDPSIDTVPELANCCREEHLHKKFCDKLTACQGMKWAKEDRQYSSLAGYDEPIGKVISIKVEETQIQPQCASVTSAAAQLEPMQTSDNPCKDGCQVCGKDLCKHIQRLMGKNCFQCSVCLKQVVTENNSTLRKLAYTKIFSAYLYEKTHIRKISCELCDKKFIESSSLSAHMKRHTGNKFWRCQTCHKSYTQSSHLIQHMKTHAGEEFSSVCCRTCLQHECSLTPTNSSDYDSIKFCDKLAACVSGVKWAKEGVPSFICGICIEKLRTAYDFQTVCLQSDQALQLRGEANERRSSRSIIRDPTTTINFVGCDETMGKVILNIKAEETQIQPLPQCAPVTSAAAQLEAMQTSDNPPKDSCQVCRNELCEHIERDCDKKFTTKYLLNYHIKSHTRDKLWQRRICNKSYTKSSQNVSCELCDKKFAQPSSLKVHLKKHTGEKFSCKLCDKKFTDPSSLRVHMKKHTGEKFSCKLCDKKFTQPYSWRVHMKGHTGEISCKLCDKKFTQTSSLRVHMKGHTGEKFSSEAHADCLETVFREPEEDGDDEEFDRRVPTSLRGLDCADAEELPLASTNEIKGIIDRTKNGKAPGSDEITNRMLKNLPPAVINADKPSLLSFEDRGGRNTRLREDISIINPIPHEQFGFRSGLSTDFQLLRFTDFIRDAMERRETTQAIFLDIQKAFDSVWHQGLLFKISQLGDNVNMVRLLRSYLRRRNCVRMGEVRSSSRPIFAGVPQGLLLAPELYIVIFLKKRMFNLQFKRKIQFYIRLHATKD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -