Dhyl000087.1
Basic Information
- Insect
- Dynastes hyllus
- Gene Symbol
- -
- Assembly
- GCA_029619255.2
- Location
- JAROYC020000001.1:832571-834414[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.7e-05 0.0083 17.9 0.3 2 23 255 276 254 276 0.96 2 13 0.037 4.6 9.3 1.6 1 20 282 301 282 304 0.93 3 13 2.8e-05 0.0035 19.1 1.6 1 23 310 332 310 332 0.97 4 13 0.049 6.1 8.9 0.5 11 23 335 347 333 347 0.93 5 13 0.00017 0.021 16.6 3.0 1 23 352 374 352 374 0.98 6 13 7.7e-06 0.00095 20.9 3.3 3 23 380 400 379 400 0.98 7 13 8.2e-05 0.01 17.6 1.4 2 23 406 427 405 427 0.97 8 13 5.9e-06 0.00073 21.2 4.4 2 23 434 455 433 455 0.97 9 13 3.7e-05 0.0046 18.7 2.0 1 23 460 482 460 482 0.98 10 13 1.3e-06 0.00016 23.3 2.3 2 23 489 510 488 510 0.97 11 13 0.00013 0.016 17.0 2.1 1 23 515 537 515 537 0.98 12 13 2.5e-06 0.00031 22.4 2.6 2 23 544 565 543 565 0.96 13 13 5e-05 0.0062 18.3 2.7 1 23 570 592 570 592 0.98
Sequence Information
- Coding Sequence
- ATGTCGATTGAAATGGTATTTAAGGAGGAAAACGAACTGGATGACCTTTTAACAGAGACCGTATTTGATTTAGCCAACTGCTGTAGAACATGTTTACGACATGAATGTTTCTTGACATCAACAAATTCCTGGGATAGCGACTCCATAAAATTCTGTGACAAATTAGCGGCCTGCGTTTTAGGAATGaagtgGGCAAGAGAGGGTGTTCCTTCGTTTATTTGTGGAATATGTATAGAAAAACTAAGAATTGCCTATGATTTCCAAGTGGAGTGTTTACAATCAGATCGAACTCTTCAACTACAAGGGGAAACCAATGAAATACAAGGTTCTAGGAGCGCAAAACTGGATCCTCTGATACCAACTAGCTTAGCAGGATGCGATGAAGCAATCGGGAAAGTTATTTCAAGTATTAAATGTGAGGAAATGGAAACGCAGATTTTACCTACAGTTTGTTTACAATCAGATCAAGCATTTAAACTACGAGGGAAAGCCGATGAAATACAGGGTTTTAGGAGTGCAAGTCCGTATCCCACAACACCAACTGGCTTAGCAGGATGTGACGAGATGATAGGGAAAGTTATTTTGGGtacaaaatttgaagaaacgGGAATGCAGATTTTACCTCGGTGTGCCCCAGTTACCTCAGCTGCAACACAATTAGAAGCTACGCAGGCACTAGATAATCCTCATAAACACAGCTGCCAGGTTTGCGAAAAAGAATCATGTGAACATTCTCAAACGCACGTAGGTGAGATAGGTTTACAATGTTCGATCTGCCTTAAACAGTTTACGACAACAGCCGAGCTAACTACGCATATGGACGTTCATGCCGAAGAAAAGcattatatttgtaatttttgcgaGAAAGGATATATTCATGAATCTGACTTTCTAGCGCATGTATGTCCACATACTGGCAAGGGACCATTTGCATGTAGTTATTGCGATAAGAAATTTACTAGCAGAGATATTTTGAATTCCCACTTAAAAACTCATGTTGGGAATAGGCCATCTCACCTCACACAGCACATGAAAACACACCCTGGAGAGAAGTTCTCCTGTAAATTATGTTGTGAAAGGTTCACACAATCTTCTGCCTTGAATGCGCATATGAAAAGCCATGCTGAtgataaactttgtaaaaactgtaataaatcatttaaaaaatctagtGACTTTTCAAAGCACATGAGGGCACATTCTGGAGAGaagatttcctgtaaattatgcgaTAAACAGTTTACGTGGTCTGCGTCTTTAACAAAACATATGAAAAAGCATACTGGTGATAAACTTTGGCAGTGTCAGATCTGTAACAAATCGTATACACAATCTCACCATCTTTCAGAACACATAAAGACACATACCGGAGAGAAATATTCCTGTAagttatgtgataaaaagtttacaTGGTCTCGCTCTTTGAATCGACATATGGAAAGCCATACTAGAGAGAAGCGTTGGCAATGTCAAATCTGTAATAAATCATATACACTGTCCTCTCATCTTTCGGAGCACATGAGGACACATTCcggagagaagttttcctgtaaattatgcgaTAAAAAGTTTATATGGTCTGCGTCTTTACATGCACATATGAGAAAACATTCTGGCAATAAACCTTGCCGATGTGAAATCTGTAACAAATCATACGCGTACCCTTCTCACCTTGCAACACACATGAAGATACATACAGGggagaagttttcctgtaaattatgcgaTAAGAAGTTTACATGGTCGGCCTCTTTATTTAAACATATGAAAAGACATAGCTGTGAAAAGCCttaa
- Protein Sequence
- MSIEMVFKEENELDDLLTETVFDLANCCRTCLRHECFLTSTNSWDSDSIKFCDKLAACVLGMKWAREGVPSFICGICIEKLRIAYDFQVECLQSDRTLQLQGETNEIQGSRSAKLDPLIPTSLAGCDEAIGKVISSIKCEEMETQILPTVCLQSDQAFKLRGKADEIQGFRSASPYPTTPTGLAGCDEMIGKVILGTKFEETGMQILPRCAPVTSAATQLEATQALDNPHKHSCQVCEKESCEHSQTHVGEIGLQCSICLKQFTTTAELTTHMDVHAEEKHYICNFCEKGYIHESDFLAHVCPHTGKGPFACSYCDKKFTSRDILNSHLKTHVGNRPSHLTQHMKTHPGEKFSCKLCCERFTQSSALNAHMKSHADDKLCKNCNKSFKKSSDFSKHMRAHSGEKISCKLCDKQFTWSASLTKHMKKHTGDKLWQCQICNKSYTQSHHLSEHIKTHTGEKYSCKLCDKKFTWSRSLNRHMESHTREKRWQCQICNKSYTLSSHLSEHMRTHSGEKFSCKLCDKKFIWSASLHAHMRKHSGNKPCRCEICNKSYAYPSHLATHMKIHTGEKFSCKLCDKKFTWSASLFKHMKRHSCEKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00627518;
- 90% Identity
- iTF_00627521;
- 80% Identity
- -