Dhyl001028.2
Basic Information
- Insect
- Dynastes hyllus
- Gene Symbol
- -
- Assembly
- GCA_029619255.2
- Location
- JAROYC020000001.1:12467648-12476707[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 4.6e-05 0.0057 18.4 4.4 1 23 133 155 133 155 0.98 2 14 0.0013 0.17 13.8 7.5 1 23 161 183 161 183 0.97 3 14 1.7e-05 0.0022 19.7 0.6 1 23 192 214 192 214 0.96 4 14 0.00032 0.04 15.8 0.5 1 23 253 275 253 275 0.99 5 14 8e-06 0.00099 20.8 7.5 1 23 281 303 281 303 0.97 6 14 0.0027 0.33 12.9 5.0 2 23 324 346 323 346 0.95 7 14 0.0001 0.013 17.3 5.1 1 23 413 435 413 435 0.97 8 14 7.3e-05 0.0091 17.8 1.3 1 23 441 464 441 464 0.95 9 14 9.6e-06 0.0012 20.5 0.3 1 23 469 491 469 491 0.98 10 14 4.2e-07 5.2e-05 24.8 0.6 2 23 500 521 499 521 0.97 11 14 5.4e-08 6.7e-06 27.6 1.4 1 23 528 550 528 550 0.98 12 14 5e-05 0.0062 18.3 1.3 3 23 562 582 560 582 0.92 13 14 0.00061 0.075 14.9 5.5 1 23 588 610 588 610 0.99 14 14 0.016 1.9 10.4 0.3 1 16 616 631 616 632 0.86
Sequence Information
- Coding Sequence
- ATGATTAATAGTTGTGATAGAATTGTAATGGAAAAACTATGTCGATCATGTATGTGCGAAAGCACGAACGTTAGAAACTTATTTGAAATTAAGGATGCGTTAGATCAACCCTACATTATAGCCGATATGTTTATGGCTTGTTCTTCTGTCGAGATAACAAAGGGTGATCCTTTACCAAAAATCATCTGTGCGCAATGTGAACTTAAACTATCTGTTgcttttgaatttaaacaacaatGTGAAAAAACCGATGTTTCTCTTCGCAAATTAGCACAAAGTGAAGGTGAAGAAATAGAAGTAAAACCGGAAGTAAACAATTACTATGATGACGATGATGATAATGGGACTATATCCGATTCAGATGAATCTAATGCaagtaaaaatgaaaagaattcGTTTCGTTGCAAATATTGCTCGAAGGAATTTCGATCAAAAAATGGTTATAAATTACACATGCAAAAGcacaataatgaaaaattacataCTTGCCATATAtgtcaagaaaaattttcaaaaagcaatTTACATAAACATTTGCAAACTGTGCACAAAACTGATGCAGAGTATAACACTCACATTTGTGATGAATGTGGTTTAACTTTTCCTAAGGCTTATTTGTTATCTAAACATATGAAAGAGcataaaaatcaaaatcttaGTACTAATGCAGCTGAAGATGATAAAATGGTAATATCggaatatttaaaagatgaatTTTCTAATGAAGAAAATCAGGATAAATCAGATAAGGATAAATATGAATGTAAATTTTGTAGTAAGGTTCTGGCAACATATGTAGGTCTGAAGATACATCTACGCCGGCATACTGGCAATAATTTACATTCTTGTAGTgttTGTAAGAAAACTTTTACCAAAAGCAATCACCTCAAACGACACATGTTAACACACGGGGTTAATGTTGAAACGACGAAATCTTCCGACAATAGTGATAAGGATAAGAAAATTATGCAATGCGAATTTTGCGATCGAAAGTTCAAATACAAGAAGAGTTTTAGTCAGCATATGCATAACGAACATGGAATATCTGACGAGAGTGATGTACCACTAAGTACGTTTATTGGAAAGAAAGAGACATCTGAACTTGAAGAAGAGAATGCTGAACCTGGGAAAACAGATGAAACTAATGACGGTGAAGTAATTGATAATGGTTTAAATCCAAACATCGACAGCATACCGGACAATGAATTCCTCATGATGACAAAGACCACGAGGTGCTATACATGTCACGTATGTAACGCGCAGTTTGTCCGATCTAATCATTTAACGCGTCACATGACCTTTCACAAAGCAGTTTTGATACATAAATGCTATCGTTGCGACAAAGCTTTCGCAACCCCCGAATACCTGGCCAAGCACACAAAAGAAGATCACATCGACAAGCCATATACTTGCTCTATATGCAATAAGACATACGCCAGAGGGGAACAGCTCATCAGGCATTTAAAAGCGCATTTAAATCCGACCGAGATCGATATTACGTGTTCAATATGCGATAAGCAATTTACTAGGTCTGATCAGCTAGCGAAGCATTTAAAAGTACATCTACAGCAGGATAAGCGACATGTTTGCAACGAATGCGGTAAAGCTTTTAATAGGTTAGACAATCTAAAAACGCACCAAAGGATACACACCGGGAAAAAGGAAAGCTCCAAATTACATCTCTGCATTTATTGCGGAAAGGAATTTAATAATTCAAGTAACATGATAGTTCACATAAGAAGGCATACCGGCGAAAGACCTTATAAATGCAGTCAATGTGATAAGGGATTCCCTCGTTCGCATGATCTCAAATGCCACGAAAGGACGCACTCGGGAGAAAAACCATATATGTGCACATTGTGTGGAAAAGCCTTTAATAAGAGCAATAAATTGAATGGATGCTTGAACAAGAAGATAATTTTTCAAGTTGACCCGTATTCCTTGGAAGACGATGCTGAAAATGCGACTACAGTTAATGCCGTTCGCTATCAGAGCATGTTAACCGACTTTTTATCGGATCAATTGAAAGATTTGGACGCTGATGAcctctggtttcaacaagacagTGCCACCAGCCATACAGCCAGAAAAAAGTCGCCTTACTTCAGACTCGTTTCCCGGACGGGAATCTCGTGGGGGTATAATTGGCCCCCTGTTTGTGTGATTTAA
- Protein Sequence
- MINSCDRIVMEKLCRSCMCESTNVRNLFEIKDALDQPYIIADMFMACSSVEITKGDPLPKIICAQCELKLSVAFEFKQQCEKTDVSLRKLAQSEGEEIEVKPEVNNYYDDDDDNGTISDSDESNASKNEKNSFRCKYCSKEFRSKNGYKLHMQKHNNEKLHTCHICQEKFSKSNLHKHLQTVHKTDAEYNTHICDECGLTFPKAYLLSKHMKEHKNQNLSTNAAEDDKMVISEYLKDEFSNEENQDKSDKDKYECKFCSKVLATYVGLKIHLRRHTGNNLHSCSVCKKTFTKSNHLKRHMLTHGVNVETTKSSDNSDKDKKIMQCEFCDRKFKYKKSFSQHMHNEHGISDESDVPLSTFIGKKETSELEEENAEPGKTDETNDGEVIDNGLNPNIDSIPDNEFLMMTKTTRCYTCHVCNAQFVRSNHLTRHMTFHKAVLIHKCYRCDKAFATPEYLAKHTKEDHIDKPYTCSICNKTYARGEQLIRHLKAHLNPTEIDITCSICDKQFTRSDQLAKHLKVHLQQDKRHVCNECGKAFNRLDNLKTHQRIHTGKKESSKLHLCIYCGKEFNNSSNMIVHIRRHTGERPYKCSQCDKGFPRSHDLKCHERTHSGEKPYMCTLCGKAFNKSNKLNGCLNKKIIFQVDPYSLEDDAENATTVNAVRYQSMLTDFLSDQLKDLDADDLWFQQDSATSHTARKKSPYFRLVSRTGISWGYNWPPVCVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -