Basic Information

Gene Symbol
-
Assembly
GCA_029619255.2
Location
JAROYC020000008.1:36267969-36280105[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.7e-11 1.5e-08 35.6 0.0 3 38 74 109 72 111 0.92

Sequence Information

Coding Sequence
aTGTTTACTATAAATGTTGTTGCTTTGCCACCGGATGAAGATGAAGCTCCAAAAAAGGACATTGGATTTTCAGAAGTAGAAGACACGCCGGGTATGTTGGATGTGGAAATTCTCGAAAAAGAGACCGTTCAACATAAGGATAAACGGCGGAAGGTGCTTAGCACAAGTTGGACCTCAAGTACAATGTCAACTAAGGCTAAGAGGCAAGAATGGCAGGAGAAAAACATGGCGGAGGCTTTGAGAAATGTTCGAGAAAAAAAGATGGGATGGCAATTAGCGTCGAAAACCTTCAACGTCCCTGCTACAACACTACGCAGAAGattcaaaaacaattaa
Protein Sequence
MFTINVVALPPDEDEAPKKDIGFSEVEDTPGMLDVEILEKETVQHKDKRRKVLSTSWTSSTMSTKAKRQEWQEKNMAEALRNVREKKMGWQLASKTFNVPATTLRRRFKNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-