Dnoa008301.1
Basic Information
- Insect
- Dufourea novaeangliae
- Gene Symbol
- PRDM15
- Assembly
- GCA_001272555.1
- Location
- NW:417670-422027[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.021 1.2 8.9 0.2 2 20 32 50 31 52 0.94 2 21 0.24 14 5.6 0.4 2 21 60 79 60 80 0.92 3 21 0.0035 0.19 11.4 7.8 2 23 95 116 94 117 0.92 4 21 8.5e-06 0.00047 19.6 2.4 2 23 458 480 457 480 0.95 5 21 0.072 4 7.2 0.6 5 23 487 506 486 506 0.92 6 21 2.6 1.5e+02 2.3 2.3 2 20 562 580 562 582 0.91 7 21 0.0097 0.54 10.0 1.9 1 22 699 720 699 720 0.96 8 21 0.00015 0.0082 15.7 0.2 1 21 727 747 727 750 0.88 9 21 0.15 8.4 6.2 4.3 1 22 760 781 760 783 0.89 10 21 0.32 18 5.2 0.1 2 20 806 824 805 826 0.90 11 21 0.038 2.1 8.1 2.4 1 23 833 856 833 856 0.92 12 21 0.005 0.28 10.9 4.4 1 23 867 890 867 890 0.94 13 21 0.0029 0.16 11.6 0.1 1 20 919 938 919 940 0.95 14 21 0.0047 0.26 11.0 0.5 1 23 947 970 947 970 0.94 15 21 0.0035 0.19 11.4 0.6 1 19 1037 1055 1037 1058 0.94 16 21 0.015 0.85 9.4 1.0 1 23 1065 1087 1065 1087 0.97 17 21 0.062 3.4 7.4 1.3 1 23 1097 1120 1097 1120 0.93 18 21 0.24 13 5.6 1.2 2 21 1145 1164 1144 1165 0.92 19 21 1.3e-05 0.00075 19.0 0.8 1 23 1172 1194 1172 1194 0.98 20 21 0.11 6.3 6.6 1.3 1 23 1203 1226 1203 1226 0.94 21 21 0.0033 0.18 11.5 1.3 1 23 1323 1346 1323 1346 0.97
Sequence Information
- Coding Sequence
- ATGTCTGAACCATATCGAAAGCTTAGAAGAGTAACCCGGGGTAGCCACGATACAGTGCATCGTCCtcgtagaataatttcaaagcCCTCTATAAAATGTGATGTATGTTCGCTAACATTTAAATCAGAACTATCATTGAGGAGTCATACTGATTATTACAATGATGTGGTTGATCGTGTCTGTGATATATGCCAGTTAGTATGCAAATCACGTATTTTGTTAGCAGATCACAAAAAACAATCTGCTTGTAAGATCAGTACTAGAAGCTCATCAGGATCATGGATTTGTAACTTTTGTAGACGATCGTTTAAGCATAAGTCATATTTACGGGCTCATTTATTTCATCATCATGGAAATTTGGTCTCTTCATCTACAAATGAATCTGATAAAACAAGCGAGGTTCTATTGTCTGCGGGTACTAACAATCACACGATGGATCTTCCTACGCAACAGACAGAAAAAACTCCAACTAGCTCACCAAGAACGATGCGACAGACAACTATGACCGAATTCTTCTCGCCTTTTGGAAAAAAGTCAAAGGAGAAATCTGTTATCCCACAAGATGTGGTCTTCCCCAAGAAAGTGGTTTCTCCGAAACAAGTGGTCTCTCCAAAAAAAGTGATTTCGCCAAAAAAGACGATCTCTCCAAAGAAGGTGGTTTCTCCAAAGAAAATTAGTGTCACTCCTAGGCAAAATGgaacattaataaattcatcTAATCATGATTGTGAACAGAATACAGTGATTAACAGTCAGTATCCTGTGCCTGATACTAATTCTGCTACAGACGTAAAACCCTTTGTTCAGATACATGTGAATTCCAATATAATAATGTCCTTATTGAAGGATGAAAAAGAGAGTGAAGTGGATGATCATACCACCTGCTCTACATCGCACAGTGCAGCCTATAATCTTAGGCAAGTAACAAGAAATGATGCTGACCGATCAACAATTGATTCGGGTATACACCGTATCCCTAAACCACTTAACAAAAGGAGACGGTCTACTATTACATCTAAACGAAGACAGAAAGGCTTACAGTTATCTGAACAAGAACTGAAGGCACATTTTGGGTGTAAAGAGTGTACAGTTCGTTTGGAGAGGTGCAATAAGGTTACAAGTAAAAAATCTCTTATGGTCGATGAGCTACAACATCTTCCAATACCAGAGGTCAatgtaaaaatagaaagaaactttgaaaatgttgaacaGATTCCAAAAAAGGATTTCACGCTAAAGAGAGTAGAAGTTTCATTAGTGAGAGTGAATGATCTCATAAAGGTTCCGGTTAACAAATCGTTGTTGTGTCCAAAAGTGCCGAGTACACCTTGTGATACGTTTGAAGTGAACGTTAGGGAAAAATTGAAGTTGCAGTGCAATGTTTGCAAGaaatcattttctttaaagaatAACTTGCgtaaacatttgaaattgtatCATGTGGCCTATATGTCAAGTATATGCAAAGCTCGGTACAGATCCAAGagtaaattattgaaacactATCTAAATCAACATGCTGTTTCGAAGCGGAAGGTGTGCTGTGTGTGTCTTACAAAACTGAAGTCACCATTGCAACAGGTGCAACATATGTCTTTACATTGCATAAGAATTATACGATCTAGGAAAGATAATTTGACTATGAGTGGTGCAACCGAGTGTAATCTACTTAAGAAATCTAATCGATGTAAAGCTTGTGGCAAGCATTTTTGGTTAAGTTCGTGCTTGAGTCAACATCAAACAGTTTGCCGAAAAATGAAGGAAGGGTATACGAAAATGAAAGGGAATGTGGAGAAAGATCATGCACTTATCGTGAAAACGTTTCCGTTTGTTTCGGCAAAGCAAGTACTTGACGGCACTACACACATTGAATATGACCACCTGCCAGGAATAAAGTATCCAGCACCTGAAGTCAGTACACAGTTTCCCAATAGCGCATATtcagtttcaaatatttctcacAACAGTCCTGCTTCTTCTGTCTCTGAATCAAAAGTTCGGTCACGATCAGTAGCAAATCATAAAAGTCTATTGAAGGGTGTTGCATTCGTGAAGGGATACAACATCGATGCTACTGGCACAGATAAAGAGAAGTTCCCCTGCACCGTTTGTGGTATACAATTTCAcacatttcaaaatttgtgcTTACATGAGCGCACGTTTTCCAAACCTGCCGTACATGCCTGCGAAATCTGCGGGACCGCTTTTACCACCAATAGAATGCTACAAGTTCACACAGTTGCAACTCACACTCTTTCCGATGCTCAAGACTTCAAGTATTTCTGCACATTTTGTACCCAGGGCTTTTTCAACAAAACCAGCCTGCAAATTCATACAGGCCACTTCCATGCTGGTCAAACACCTATTATTCCAAAACTATGGTTGGATTGTGAACGCGTTTGGGGCGTGAATACGGTATGTAATGTATGCAACCTGATGTTCGAATCCCTTGATCGATTCATCGAGCATAAGATGTACTACTACGGAGGCCAAGCGTTTACTTGTACATTTTGCAACAAGACGTTCCAGGGAATGTATTTGTTTAATCAGCACAACAAATTGGCACACTATTCAGACGACATGCGAAAATTATGCACTTACGTGTGTAATATCTGCAATGAGGGTTTCAACAAGGAATCACATTTCCATGCGCATAAGTTACACGTTCATTTAAACGAAGTGTCTTCACAATTAGATCACACATACGCGATACCGAGTACACCTAGTATGCCAGTCAATACGTCGGTCATGTGGTATACTTGTGACATTTGCTACATGAATTTTTCACAAGACGAAGATCTCCAGGCGCACAAAATGGAGTTCTGCAATGATGGAGAGTATCTGTGTAGTTATTGTCCGAGGATGTTCCCTACCAACACTATTCTTATGAAGCATGAAAGATTGACGCATACTGCTGACAATATCAACGACTATCATAAATGCCGCCACTGTAAAGAAGTACTGGTGTCAAGTGCGGCACTGAAGTGCCATGAAATGCATTTTCACAATATGATCTCTGATCTTAAATGTAGCAGTACTGATCAGTTTCGTACACATCAGAGTGCTTGTGGCGAAAACGTAGACAAATCTGATAACGGAGAGGGTAACTTTCGCTGTACAGTCTGTGGCATGAGATTtcaaagtcgggaaaaactgaaCTACCATTTTCTGGAGTATACCAATGACGGTGCATATAGTTGCGAAATTTGTTATAGAAAGTTCCCGGAGTTGTATCGCTTGGAGATGCACAAACTCAAGCACTCcaatttaaactttattttgtcTAAGCATCACTGCCCTGTATGTCGTGAGGGATTCGCGAGCGTCGCGAATGTTCGAGCGCACGTATTACATTTTCACGGTCACCTAAGTTCTAGTATCTTTCCATCTAAGCAACTTCGTTCAGATGGTCAATTGAAACGGAGACCAATAAAATGTTCTGAATGCCACGCCAAATTTTTGTCCGTAAGTACTTTAAAAAAGCATAAACTGCGTTTCATAAATGACGGGAAGTATATTTGCGAATACTGTGGTAGGAAATTCGCTCGAATTAACCTACTAAGGCAAcacgtaaaaaaacatactatTAACAGTCAGTTACTAAAGTATCCGTGTACTGAATGCGACGACAAATTTCGAAATGCGTTTCAACGGTATCAGCATATTATTCATGTTCATGGGATGAATAAACGGAAAAGTAAAGGCACCGACTTAAACACGATTCAGTACGATTTTCCCGCTCTTTATGAACAATTCATCGGTGACGAATACAATCGGGTTTCAATAGCAAATTACTCAGCAGTTCAGAATTCGAATACAGGGCCCGCTGAGTCGTTAAATCTCGCGAGTAAATGCAATGACGAACTAGAGAAAGCTGCATCGACGGTAGTCAACTCGATAAACAAAACATCGAATACTGTTGAACTGGTGGGGATAGTTGAACATTTGGAAGAAAAGCCGCTTTATTACACCTGCCCCATCTGTAGTTTCAAATATGCAACACTGAAGATGTTCCAGTCACACTTCAAAATGGCACATAAGAGAATGATCGAGGGAACGATCTCTGGTCTATCAGACAATACCACGAAGAACCGTTGTGAAAGCTGCAGATCCACTTTCCCTAACTTCCCCTTCAGTCTTCGGAAAATGATTTTGATGTGTTATTTTGCTTCGGAAGTTGGTTATGCCACGATTGTATCAGGGGAAGAGGTACCCATAGCAGCGAGTAATGTTGGCAAGCTCAAagttaaagaatttgcaaaaatGTGA
- Protein Sequence
- MSEPYRKLRRVTRGSHDTVHRPRRIISKPSIKCDVCSLTFKSELSLRSHTDYYNDVVDRVCDICQLVCKSRILLADHKKQSACKISTRSSSGSWICNFCRRSFKHKSYLRAHLFHHHGNLVSSSTNESDKTSEVLLSAGTNNHTMDLPTQQTEKTPTSSPRTMRQTTMTEFFSPFGKKSKEKSVIPQDVVFPKKVVSPKQVVSPKKVISPKKTISPKKVVSPKKISVTPRQNGTLINSSNHDCEQNTVINSQYPVPDTNSATDVKPFVQIHVNSNIIMSLLKDEKESEVDDHTTCSTSHSAAYNLRQVTRNDADRSTIDSGIHRIPKPLNKRRRSTITSKRRQKGLQLSEQELKAHFGCKECTVRLERCNKVTSKKSLMVDELQHLPIPEVNVKIERNFENVEQIPKKDFTLKRVEVSLVRVNDLIKVPVNKSLLCPKVPSTPCDTFEVNVREKLKLQCNVCKKSFSLKNNLRKHLKLYHVAYMSSICKARYRSKSKLLKHYLNQHAVSKRKVCCVCLTKLKSPLQQVQHMSLHCIRIIRSRKDNLTMSGATECNLLKKSNRCKACGKHFWLSSCLSQHQTVCRKMKEGYTKMKGNVEKDHALIVKTFPFVSAKQVLDGTTHIEYDHLPGIKYPAPEVSTQFPNSAYSVSNISHNSPASSVSESKVRSRSVANHKSLLKGVAFVKGYNIDATGTDKEKFPCTVCGIQFHTFQNLCLHERTFSKPAVHACEICGTAFTTNRMLQVHTVATHTLSDAQDFKYFCTFCTQGFFNKTSLQIHTGHFHAGQTPIIPKLWLDCERVWGVNTVCNVCNLMFESLDRFIEHKMYYYGGQAFTCTFCNKTFQGMYLFNQHNKLAHYSDDMRKLCTYVCNICNEGFNKESHFHAHKLHVHLNEVSSQLDHTYAIPSTPSMPVNTSVMWYTCDICYMNFSQDEDLQAHKMEFCNDGEYLCSYCPRMFPTNTILMKHERLTHTADNINDYHKCRHCKEVLVSSAALKCHEMHFHNMISDLKCSSTDQFRTHQSACGENVDKSDNGEGNFRCTVCGMRFQSREKLNYHFLEYTNDGAYSCEICYRKFPELYRLEMHKLKHSNLNFILSKHHCPVCREGFASVANVRAHVLHFHGHLSSSIFPSKQLRSDGQLKRRPIKCSECHAKFLSVSTLKKHKLRFINDGKYICEYCGRKFARINLLRQHVKKHTINSQLLKYPCTECDDKFRNAFQRYQHIIHVHGMNKRKSKGTDLNTIQYDFPALYEQFIGDEYNRVSIANYSAVQNSNTGPAESLNLASKCNDELEKAASTVVNSINKTSNTVELVGIVEHLEEKPLYYTCPICSFKYATLKMFQSHFKMAHKRMIEGTISGLSDNTTKNRCESCRSTFPNFPFSLRKMILMCYFASEVGYATIVSGEEVPIAASNVGKLKVKEFAKM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -