Dnoa008927.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dufourea novaeangliae
Gene Symbol
-
Assembly
GCA_001272555.1
Location
NW:2494137-2499717[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.036 2 8.2 0.6 6 23 258 275 255 275 0.92
2 13 0.0061 0.34 10.6 0.8 1 23 280 303 280 303 0.96
3 13 0.00011 0.0059 16.1 0.4 3 23 317 338 316 338 0.96
4 13 0.017 0.97 9.2 0.5 3 23 351 371 351 371 0.98
5 13 6.7e-08 3.7e-06 26.2 1.5 2 23 414 435 413 435 0.97
6 13 0.0033 0.19 11.4 0.5 1 23 440 463 440 463 0.93
7 13 0.53 29 4.5 1.2 2 23 530 551 530 551 0.96
8 13 1.3e-05 0.0007 19.1 3.5 1 23 560 582 560 582 0.97
9 13 1.3e-06 7.4e-05 22.1 1.4 1 23 591 613 591 613 0.98
10 13 0.029 1.6 8.5 4.4 1 22 619 640 619 640 0.95
11 13 0.00019 0.01 15.4 2.9 1 23 667 689 667 689 0.99
12 13 0.12 6.8 6.5 0.0 1 23 752 775 752 775 0.97
13 13 9.6e-07 5.3e-05 22.6 5.7 1 23 780 803 780 803 0.98

Sequence Information

Coding Sequence
ATGGCTGTGCTCAACAACTGGGAGAAAGTTTGCAGATTGTGCTTGGAGGAGAGAAACGAGATGCTGCCGATTTTCGGCAACGAAGGTGTGCAGCGCAAAGTCGCGCAAAAGCTACGAGCCTGCTTGCCTGTTTTAGTATACAAAACCGATCCACTGCCAAAGCAAATATGTCAGTTCTGCGCCGCCAGGTTGGACGACGTTTACGAGTTTAGGGAATATTGTTTGAGTGTTTACAAGTGCATGCACATAAAGTTGTTGGCATGCAAGGATCTCGAGTCCGTTCAGATTTACTTGGACGCAATGAAGAACTCTCCTGACCCTTGTCAGGCACAATTATGGAGGGAGAAGGCACGAGCACCACCACCATTAGTACCTCTGCCAGCCTCACTGCCAGTTGAGAATCCATCAACACCAATAGATATTAGTCAAGAACATACAAATACATGTATTGAATCTTTGCCCGAATTACCTTGCGAAGTAGAGATCAAGGAAGTGAATACAGATTCAATTTTAGGAACTGATGTtagtatttatgaatcacaGAGTGCAAACAATGTAAAGAATGAACTGTATAAGCCAGATATAATAGTGGAAGATAATGCTAGTTTGTCAAGCGAAGAGAACAATTATTCACAAGAAGAAATACAGAtaaaaaaggaagagaaaagaaCGAGTATTTTAGAACAAGTGCTAATGGGCAGTTTAACAATGAATGATAGGAAGGATTTAAATTCAAAGGAAATGTTATCTTCGAAGTGGTGGTGTGCTCCTTGCAATAGTTACTACAGAACAAAAGAAAGCTTAATGAAACACATGCAGTTACATTGTCCAAGGAAGTACACTTGTAGAAAATGCACAGAGTGCTTTGCATTAGTCGAAGAGTTAGCTAAACATGAAGCTACTAGCCATTTAAAAGTGACACTGGATTTTGATAAAAGTCTTCAAGATTGTGATCAATGCGACAGACAGTTTGTGAGTTGGGAAATGTTAAAGCAACACAGGCTACGCGATCATTTAGGCGAAGCAATTGATATTGGGACCAATACATGGTGCTCATTATGCAATAGatTTTTCCCAAGTATAGAAGCCTATCAAAATCATACTCAGTTACacgaaactaataattatacacCGGTGAAGGCTTCACAATTGTCGGATCAACAAGTAACAATTATCAAAGCCGAAGAACCTCCGAAGGAAATAAGGAGAGAACATTTCGTAGAAGCTACCAAATCACTTACATGTCCCACGTGTGGAAAGGTGTGTACGCAACAAAGTGCATTGTCGAATCATATGCGCACCCATGAACCCAAAAGACATAAATGTGATATATGTGGACGATCTTTCGGACTTTTCATACGTTTAGCAGCGCATAGAATGAGCGAACATAGTCAACAGCCTACAATGTCGCCCGTCATGGCTAGCGTTGAACAAGAAGAAGCATTAAATGCTGAAAGAGAAGCAAGGGAAGCCAGAACCCGTGCAAGATGCAGAACATATTCAGAGATGATGGACAGGAAAGACATCACCAACCATGAAGAACCACCTCCAAAAAAGAATACTCCCaatgcatttaaaaatgtggCAAGATGCGGTATCTGTTTAGAGTGGTTCAGTGATCATACAACAATGTTAACGCATTTACAAACGCATTCGGACAACTACACTTGCAAGAACTTCATTTGtcatatatgtaaaaaatctTTCAAAGAGAAATGGCAGTTGTTTAGACACGAGATGTCTCATAAACGTAATGAATCCGTGCCAATGTACATATGTTCCGTATGCAACAAATCGTTCGCCGACAAGAATGCATACAAAACGCATCAGAAGACGCACATCGTAGATAAGACATATCACTGTtcgaaatgtaataaaatattttttaaagaggTGACACTGTTGACACACCAATGCACGACAGAAGGTTTATTCGGTAAAAAGGGTGTTACAGCGAAGTCTTCGCAAAGATCAGGATCATTGGGCAGTGGGAAAAAATACAAGTGTTCCAAATGTAACGCGACGTTCAGTAGTTTTCAATCGAAGAATTCTCATATGAGAGTCCATACAGAAGGCTCGCATTCAGTGGTACAAAAggacgaaataaaaatagagtCAGAAGATGAGTCTATGCCAAAATTAAGTCCTGAAGCAGCGTTGGAATATTCAATGGCTATTGAACCAAAGGTGGAAATTAATGAAGAGAGTGCACCACCGCCTCTTAAACGAACTCTTATTAAGACAACTGGCGGatatCGATGTGGAGTATGCCAGTCTCCGTTCGTCTTACGGGAATTAGCTGTCGCTCACTTAAGATCTGCACACCCGTTAATGCCGTACCAGTGTCcttattgtaaaaaacgaTTCACGACTCAGTACACTTTCACGCATCATATAAAATCAGATCATCCTGATGAGCATGAGAATTGA
Protein Sequence
MAVLNNWEKVCRLCLEERNEMLPIFGNEGVQRKVAQKLRACLPVLVYKTDPLPKQICQFCAARLDDVYEFREYCLSVYKCMHIKLLACKDLESVQIYLDAMKNSPDPCQAQLWREKARAPPPLVPLPASLPVENPSTPIDISQEHTNTCIESLPELPCEVEIKEVNTDSILGTDVSIYESQSANNVKNELYKPDIIVEDNASLSSEENNYSQEEIQIKKEEKRTSILEQVLMGSLTMNDRKDLNSKEMLSSKWWCAPCNSYYRTKESLMKHMQLHCPRKYTCRKCTECFALVEELAKHEATSHLKVTLDFDKSLQDCDQCDRQFVSWEMLKQHRLRDHLGEAIDIGTNTWCSLCNRFFPSIEAYQNHTQLHETNNYTPVKASQLSDQQVTIIKAEEPPKEIRREHFVEATKSLTCPTCGKVCTQQSALSNHMRTHEPKRHKCDICGRSFGLFIRLAAHRMSEHSQQPTMSPVMASVEQEEALNAEREAREARTRARCRTYSEMMDRKDITNHEEPPPKKNTPNAFKNVARCGICLEWFSDHTTMLTHLQTHSDNYTCKNFICHICKKSFKEKWQLFRHEMSHKRNESVPMYICSVCNKSFADKNAYKTHQKTHIVDKTYHCSKCNKIFFKEVTLLTHQCTTEGLFGKKGVTAKSSQRSGSLGSGKKYKCSKCNATFSSFQSKNSHMRVHTEGSHSVVQKDEIKIESEDESMPKLSPEAALEYSMAIEPKVEINEESAPPPLKRTLIKTTGGYRCGVCQSPFVLRELAVAHLRSAHPLMPYQCPYCKKRFTTQYTFTHHIKSDHPDEHEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00762732;
90% Identity
-
80% Identity
-