Dnoa001297.1
Basic Information
- Insect
- Dufourea novaeangliae
- Gene Symbol
- -
- Assembly
- GCA_001272555.1
- Location
- NW:307278-313608[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1.8 99 2.9 7.7 2 23 243 265 242 265 0.96 2 21 0.011 0.61 9.8 2.5 1 23 315 337 315 337 0.97 3 21 0.015 0.85 9.4 1.5 1 23 386 408 386 408 0.98 4 21 0.025 1.4 8.7 0.2 1 20 463 482 463 484 0.94 5 21 4 2.2e+02 1.7 2.6 1 10 496 505 496 519 0.71 6 21 3.8e-05 0.0021 17.6 1.4 1 23 524 546 524 546 0.98 7 21 0.00054 0.03 13.9 0.1 1 23 593 615 593 615 0.97 8 21 0.00052 0.029 14.0 0.1 1 23 621 643 621 643 0.97 9 21 0.00028 0.016 14.8 0.6 5 23 690 709 687 709 0.91 10 21 0.086 4.8 7.0 1.6 2 23 717 739 716 739 0.92 11 21 1.5e-05 0.00083 18.8 0.3 2 23 748 770 748 770 0.97 12 21 7.8e-05 0.0043 16.6 0.0 1 23 778 800 778 800 0.94 13 21 0.024 1.3 8.7 0.4 1 20 854 873 854 873 0.97 14 21 3.9e-05 0.0022 17.5 0.1 1 23 891 913 891 913 0.98 15 21 0.00026 0.014 14.9 0.5 1 23 931 953 931 953 0.97 16 21 8e-05 0.0044 16.5 6.4 1 23 975 998 975 998 0.95 17 21 0.018 1 9.1 1.8 2 23 1053 1075 1052 1075 0.93 18 21 0.028 1.6 8.5 4.2 3 23 1107 1128 1105 1128 0.91 19 21 0.0021 0.11 12.1 0.1 1 23 1135 1159 1135 1159 0.97 20 21 0.0088 0.49 10.1 1.6 1 23 1164 1187 1164 1187 0.97 21 21 0.035 2 8.2 2.3 2 23 1217 1239 1217 1239 0.94
Sequence Information
- Coding Sequence
- ATGGACGACGTGGTGGAGTTGCAAAACATGGAAAATGTGTGCAGGCTCTGCTTATCCAACGACGAGCCGAAGACGTCGGTTTTCGGAGCCCAAGATTCTCCGGTGTCGTTGGCCACTAAGATACAAGCGTGCCTGTCGATTCAGATTTCAGCCACGGACAAGTTGACAACACAGATATGTGCACAATGCGTTAAAAGTGTAAATCAGTGGCATATTTATAAGGAACTTTGTCTTCGATCGCAAGATAAATTACATCAATGGCtagaaaaacatttacaaCCCAACCCAATGGTTGTTACTATCAAAGATGAACCTGTGGATTTGGATTTTTACGAGGACAATATCGAAGTCATTTCAGAATCCACCAGTGATTCAGATGTAGAATcgactaattttcaagaaagtataaataacTCTGTGAACACAATTCACATTCAAGAAATAACCGATGATGAGGCAGATGTGCCGAAAGCTCAACCAGCACAGACGAAAGATACAGATGTATGTATAAAGTTGGAGCCGCAAGAAGACTATGATACAGATTGTACCATAGAAATAGAATCTGTCACTGGTAGCGAACTTGTACCAAATCCCCTCTCCAACAAAGAAGATAGAATAATGGAAGCTGACTCAACCCAAAAACCCAGTGCGTCCACATCAGCAAGTAAAAAGAAAGTCAGAAGAGGCCCTCATACTCATTATAGGGGAACGCGTGTTTTTAAGCAAAAATGTGTACACTGTCAGATCCATTTACATTCTAAATATTCGTACACAAAACACATGGAAAGATTCCACACGGAGAAGCCAAATGGTGGCAATGATACGCTCGCGTTGCAAGATGAAGAAGAGTTGGTCGAAGATCTGGAGGATGAGTTGATGAGTATGGAAAAAGATGCACCGTTGACCCAAGTGCAGCAAAACATTATCAGTCAATTGAAAACGTTTTCGTGTTATTCCTGCCAGCAATCGTTCAGCGACCGTAGGAGTACACTGTCGCACATTCGCCAGCATATGCCTGATCTGAGACCATACACGTGTATCGCGTGCTTGACGGAGTTCCCGGACCGATCGATGTATAAATTGCACTGTGGTGCGTCGTTCGAGTGCGCGATGAAGATCGCACTTGTGATCCCGAACCAAGGCGAAGAAAAATACTTCACGTGTAACATGTGTCTGCGTTCCCTTCagaatagaaaagaattgCTTAGCCATCTTTCAAAGCACTCGGACAAACAGTACCAACAGCTAGTCTCGCCAGCACGATCCCCGCCGAAATTAAAACCGATTTCGCCTCTGCCAGCTTTTAAACAAGAATCGATGAGAAAATCAGGCGCAAGAGAATTGAACATTCCCCGACCTTACAAGAACGGTGATCCGGCACACAATCACGTTTGCGACTTGTGCGGAATGATCTACAGGTACAGACCCAATATGCTCAAGCACAGAGACTTGTGCCAGCGTCTGCTGCCCGAGGTTCGAACATCCTACAAATGCGTGCACTGCGGGATGACGTACCTGGTGTTCAAAAAGTTCCACACCCATGTCACTTTGGAACATAAGAAGAAAGATTTCACGTGTTCCGATTGCAACGCTAAATTTCGTTCTCCCAGCGACTATCTGGCGCATCACGAGACGCATCGTGTGGCGGTGAACAGGAAGCCAGTGTTAGAGAAGCAGGAGCCTGCCAAAGGTGCGCAAAACATCTCGACGCCCATTAAAGACTGGGACACGTTCGAGGCGGAGGTGAACGCCGGTAGGCTATCGGACAGTAACCAGTACAGTTGTGCTCTGTGCAACTTGGAATTTGCCACCAGAGCAGAGCTAACTGAGCACAGGAACCTCCATCTGAAGGTGAAGATCTACTCCTGCGTGATTTGTCGCAGCATGTTTAGCAGCGCCGGTGCATTAGAGATCCATATGAAGGATCATGGTATAGAGGATCCCAACGAAAGAAACGCGAACAGCTCGTGCGTCGAATATGGAACTATGGACGATAGTTCTCACGATTCTAAACCGATGAATATCAGCGCCACCTCGGACCCGGGCACAAACAAAAACGAATGCATACAATGCGGCAAACTGTTCTCGAACTACGCGAATCTCAGAAGGCACACGCGTAATGTTCACAAGCCGACCAGAATCCATGTCAGTTGCGCCCACTGTTCCCGGTCGTTCAAGAGCAAGGAGATCCGCGATAGGCATATAATGACCGAGCACAACAAGCCCAGCAAGCCCGTGCGCCAGTGTCCTCAGTGTCCGAAAACATTCGTCTTCCAAGCGAACCTGAATCTTCATTTCCAAACTGCTCACGTGAACAAAAAGGCCGGCGGTTACGAGTGCGACATATGCGGCAAAATGTTCATAGAAGAGGCGTCCCTCAAGATACACCGTGGATGGCACAACAGATCGAGCTATCGACTGAGACCGACCGAGGACCAGAAACCGATCAAAGACTCGATCGTGCCTAAACAAGAGAAAGACATGAACACCAGTCCCGATAAACCTGCCAGAGCAAGAAAATCATTCCCTAATCCGCCCCCGACAAAGCCGCAAGGTAAATTCCAATGTCAGGTATGCAACGATAAATTCAACGACGTCACCGAGCTAAGGAAACACTTGTGGGACGTGCACTGTGCCCACAAGTCCGAGAAGAACCTGATCGGCGAGGAGTTCCAGTGCGAAATCTGTACCACTGTGTTCCCCGACAAGGCAACGTTGGACATGCACATGCAATGGCACAAGTCCTGTCCGATCCTCACTCGCGTCCGTAAACCCCGACACCAAGGGAACTTCCCTTGCGACGTATGCGGGAAGCTCTACAGCTCGAAGAAGGTGCTGTGGCGACACAAGAAGCTGCACAAAGCCACCAACGTAGCCGCCGCCAAGTTCCAATCGATCATGAAGAAACCAACGGTGGCCCAGCACATATGCAACGTTTGCCACAAAGTGTTCTGCAGCAATCAATCGTTGCAACGTCATCAAATGAATCTGCACAGCGAGATGTTCAATCAACGACAGCACCTGATCTATCCATCCAGCACACGAAGAACATCGCAGGAGGAATCAGCCACGAAGAAGCTGAAACTTGAGAAAGAGGATGTACCGCAGAAACCGACGATCGCCGTGAACACGACCACCACTGGAAAGAAACCGGTCATGTGTCACGTGTGCCGAAAGTTCTTCCCGAACATGAGCGTGTTGTACAAACACAAACAGCTGATGCACAGTAAGTCACGGATGATGAAGAACGCCGCGAAAGCAGCGACTACCTCGACCACAGAATGCGTCCCATTGGTTGGAAACGACGGCAAGGTGTGCTGCAACGTTTGCTTCAAATCGTTCTCCGCCATATCGCATCTACGACAGCATTTCACCATTAAACACAAAAACTCACCGCCCAAGTACGCGTGTCCCGTCGACGGATGCAAGCTGATGTTCCCGTCCCATGCGGCGTTAAAGGCCCACGAGCTCACGCACACAAGTATGATATTCAGCTGCAATCTGTGCGGCCGTCACGTGTTCAATCGACAGGCGATGACCGATCATATGCTGTCCACACACAACACCGTCTACGACGCTGAGCACAGCAAGAACTTCCATCGTGAGACAGATCTGGCACTGTACGTGGTACAGGGAGCGGTGGACGCGACCTGTCCCCATTGCAAGATCAAATACCCGAACAACAGAGCCATGAAGATCCACTACTTCAAGTTCCACGACTGTCTAAACCAAGCGTAG
- Protein Sequence
- MDDVVELQNMENVCRLCLSNDEPKTSVFGAQDSPVSLATKIQACLSIQISATDKLTTQICAQCVKSVNQWHIYKELCLRSQDKLHQWLEKHLQPNPMVVTIKDEPVDLDFYEDNIEVISESTSDSDVESTNFQESINNSVNTIHIQEITDDEADVPKAQPAQTKDTDVCIKLEPQEDYDTDCTIEIESVTGSELVPNPLSNKEDRIMEADSTQKPSASTSASKKKVRRGPHTHYRGTRVFKQKCVHCQIHLHSKYSYTKHMERFHTEKPNGGNDTLALQDEEELVEDLEDELMSMEKDAPLTQVQQNIISQLKTFSCYSCQQSFSDRRSTLSHIRQHMPDLRPYTCIACLTEFPDRSMYKLHCGASFECAMKIALVIPNQGEEKYFTCNMCLRSLQNRKELLSHLSKHSDKQYQQLVSPARSPPKLKPISPLPAFKQESMRKSGARELNIPRPYKNGDPAHNHVCDLCGMIYRYRPNMLKHRDLCQRLLPEVRTSYKCVHCGMTYLVFKKFHTHVTLEHKKKDFTCSDCNAKFRSPSDYLAHHETHRVAVNRKPVLEKQEPAKGAQNISTPIKDWDTFEAEVNAGRLSDSNQYSCALCNLEFATRAELTEHRNLHLKVKIYSCVICRSMFSSAGALEIHMKDHGIEDPNERNANSSCVEYGTMDDSSHDSKPMNISATSDPGTNKNECIQCGKLFSNYANLRRHTRNVHKPTRIHVSCAHCSRSFKSKEIRDRHIMTEHNKPSKPVRQCPQCPKTFVFQANLNLHFQTAHVNKKAGGYECDICGKMFIEEASLKIHRGWHNRSSYRLRPTEDQKPIKDSIVPKQEKDMNTSPDKPARARKSFPNPPPTKPQGKFQCQVCNDKFNDVTELRKHLWDVHCAHKSEKNLIGEEFQCEICTTVFPDKATLDMHMQWHKSCPILTRVRKPRHQGNFPCDVCGKLYSSKKVLWRHKKLHKATNVAAAKFQSIMKKPTVAQHICNVCHKVFCSNQSLQRHQMNLHSEMFNQRQHLIYPSSTRRTSQEESATKKLKLEKEDVPQKPTIAVNTTTTGKKPVMCHVCRKFFPNMSVLYKHKQLMHSKSRMMKNAAKAATTSTTECVPLVGNDGKVCCNVCFKSFSAISHLRQHFTIKHKNSPPKYACPVDGCKLMFPSHAALKAHELTHTSMIFSCNLCGRHVFNRQAMTDHMLSTHNTVYDAEHSKNFHRETDLALYVVQGAVDATCPHCKIKYPNNRAMKIHYFKFHDCLNQA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -