Dnoa002782.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dufourea novaeangliae
Gene Symbol
-
Assembly
GCA_001272555.1
Location
NW:8783307-8786843[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2.9 1.6e+02 2.2 0.6 3 20 327 344 325 346 0.86
2 16 0.0016 0.087 12.5 2.5 2 22 382 402 382 402 0.95
3 16 0.021 1.2 8.9 4.2 2 23 445 467 444 467 0.93
4 16 0.00087 0.048 13.3 0.2 1 23 473 495 473 495 0.96
5 16 3.9e-06 0.00022 20.7 2.6 1 23 501 523 501 523 0.96
6 16 0.00024 0.013 15.1 1.9 1 23 532 554 532 554 0.97
7 16 1.2e-05 0.00067 19.1 1.1 1 23 560 582 560 582 0.98
8 16 1.3e-06 7.2e-05 22.2 1.0 1 23 587 609 587 609 0.97
9 16 0.0022 0.12 12.0 5.4 1 23 616 638 616 638 0.99
10 16 0.00013 0.007 15.9 0.5 2 23 658 679 657 679 0.95
11 16 0.00092 0.051 13.2 0.2 2 23 687 709 686 709 0.96
12 16 0.00033 0.018 14.6 0.6 1 23 715 737 715 737 0.96
13 16 0.00024 0.013 15.0 3.2 1 23 743 765 743 765 0.98
14 16 1.2e-06 6.9e-05 22.2 1.7 1 23 771 793 771 793 0.98
15 16 2.2e-05 0.0012 18.3 4.7 1 23 799 821 799 822 0.96
16 16 0.0023 0.13 12.0 0.3 2 23 827 848 826 848 0.95

Sequence Information

Coding Sequence
atgACAGTGGTTTGTGCTGCgaagaattgtaaatattcatcgaACGCTGAAAACTCAGCCCATGtcatttttatacactttCCGAACGATGATACGTCCAAAATATGGGCACATCATTGCGGTAGAACAGATCTCTTAATGAAATCAAATGaagaattacatttaaattattatatatgttcTCATCATATTGAGGAtcgttattatataaataaaacagatcCTATTATAATAGATCAGCATGCTGTTCCTACATTATTTGAATCAAATGATGCAGGAGAAAAAGATTCAAGAAATGACTTTGATAGAAATGAACAAGTGGAAGTAACGGACAATGTATTATCATATTGTGATATAGATTCTGAGATAGATCAGTATCGTGATATTAGTATTAGGTTTCCAAATTTATGCCGGATATGTGGAGAACCATCTTTGGATGGTATAGAAATATTTGCTGAGAAAGGCATGGAATtaaagttaaaagaaaaaataagtttacaCCTGCCAATAATTCTTGATATGGAAGACTTAATGCCACAAAGACtatgtataaattgttataataaattagaaatagcACATTTATTAGTTATAACTTCTTTGAAAACAGATATGAGATTAAAAcggtttttaaatattaatgaaggACTTAATTATGAGAAGAAATATAACGAAGTAGCCAAGAAATGTTCCATAGAAGTAGCAGAGGAAATCTATACGAACGAATGTACTCAAACTACATCTACAGAATTATCTCCAAATAAAGTTGAAGAAATCATAATAACCCAACATATATCCACAAAATTGAGTTACctggaaaatattgatataaaaaaaactaactCTTCAAgcaatgtaaaaaaagaaatgcagTCTGAATTGAATAGATTTATTCAATCATACAATGAAGAAAACAAAGATAATCCTGTGATTGAAACTGTAGTAAATGATTCCACAAATGATATTAATGGAATTGCATGTTTTCATTGTAAAGATTCATTTAAAACTCAAGAAATATTTGAGAATCACAAAATGTTATGCGATGAAGAGGAAATGGTAATACAGAAACAGAGGGACATCACTAATAATACGAACAGTATTGAGTCAAAAGAGGAAGCAATGAACTTTcaatttgttacaaataccTGTAATGTTTGTCATAGAcgtttcgaaaatgaaaagcATTTCGCTGCACATAGGCGTTCAAATTGTAAACTTTCGGGAGAAAAACATTACCAAATTCCAGACAAACTAAATGTAACTGAAGCAGACTGCAACATTCATGAAAACTCTGACAGTGCAAGTATTGTTGCAGTAGTTGAAACGAATAAAGTATGTGGTCATTGTAAATCCAGTTACAGtactaaaaaagaattattaaatcacATTACAGAATGTCATGAAGgtcaacaattatttaaatgtattatatgtgataaaagttatgaaaaatgGTCTAGTTTAGATGTTCACGAAGCTACTCACAGAGTAGATAAACCTTACCTATGTGACTTATGTGGGAAGAGCTTCAAACACTCCAATAACTTAAGAGGTCACAAAAGGATTCATTTAGATGACTCAAGGAAAAAACGACACGTTTGTGAAATTTGTGGAAATGGATTTAGATCTAGATTTCATTTGGGAGAACACATGAACCAACATAATGGGCATAAACCGTACCCTTGTGAAAAATGTGGGAAAGCTTTTTACAAGAGAATACAATTAAGACAACACAAATTGTCTCATGGCATGAGTAAACATATTTGTCCAATATGTGGAGCATCTTTCAACCGTAAAGGAAACATGAATACCCACCTTAAAAGACATAACAATGGAGATTTGGTATACACATGTAGTgTTTGCACATATAGATGTAAGTCAATGAgtgaattgaaattacataGGAAAAAGCATACAGAAGAAGATATCATAGAaagtattaagaaaaaatgtactGATAAAACAGTATGGCAATGTAAAATTTGCACCCGGATATTTTCAACGCGGACACTGTTGTTAAATCACGAAAGTATACACAAAGGAGAAAGAATGAGTGTAGAATGTGACATTTGTGGGAAACAATTAGCGAGCAAAAATTCCttaatttatcataaaaaatcTATACATTCTAAAGAAAGAACTCACATGTGTCAGTACTGTGGGGAATCGTTTGTTTCAAAAGAGGCGCGTCTCATACATGAACGGATACATACTGGGGAGCGTCCTtatgtttgtaaaatatgtaaaatggaATATAAGTGTTCCAGTAACCTTAATCaacatatgaaaattcattcggGCATTAAACCACATAGGTGTACATATTGTAATAAGAGTTTCACACGCAAGGGGGCCTTAGGTGTTCATGTAAGAATCCACACAGGCGAGAAGCCATTTTCCTGCGAGACTTGCGGTCGAAAATTCTCCCAAAAAAATGATATGCTGAAACATACGAAAACGCATCACGCGAAAACGTTGCGTTGTGAGCAATGCGGCGAACTTTTcacgaaaaagaaagatattcTAAAACATATCGCGTTACATGAACGAAGTGACCCTGTAATTCAAGAATATGTGGAAGTCCAACAACACATGCAATCCTATAGTGTAAACATAACATGCTCTGAATTTGAATAA
Protein Sequence
MTVVCAAKNCKYSSNAENSAHVIFIHFPNDDTSKIWAHHCGRTDLLMKSNEELHLNYYICSHHIEDRYYINKTDPIIIDQHAVPTLFESNDAGEKDSRNDFDRNEQVEVTDNVLSYCDIDSEIDQYRDISIRFPNLCRICGEPSLDGIEIFAEKGMELKLKEKISLHLPIILDMEDLMPQRLCINCYNKLEIAHLLVITSLKTDMRLKRFLNINEGLNYEKKYNEVAKKCSIEVAEEIYTNECTQTTSTELSPNKVEEIIITQHISTKLSYLENIDIKKTNSSSNVKKEMQSELNRFIQSYNEENKDNPVIETVVNDSTNDINGIACFHCKDSFKTQEIFENHKMLCDEEEMVIQKQRDITNNTNSIESKEEAMNFQFVTNTCNVCHRRFENEKHFAAHRRSNCKLSGEKHYQIPDKLNVTEADCNIHENSDSASIVAVVETNKVCGHCKSSYSTKKELLNHITECHEGQQLFKCIICDKSYEKWSSLDVHEATHRVDKPYLCDLCGKSFKHSNNLRGHKRIHLDDSRKKRHVCEICGNGFRSRFHLGEHMNQHNGHKPYPCEKCGKAFYKRIQLRQHKLSHGMSKHICPICGASFNRKGNMNTHLKRHNNGDLVYTCSVCTYRCKSMSELKLHRKKHTEEDIIESIKKKCTDKTVWQCKICTRIFSTRTLLLNHESIHKGERMSVECDICGKQLASKNSLIYHKKSIHSKERTHMCQYCGESFVSKEARLIHERIHTGERPYVCKICKMEYKCSSNLNQHMKIHSGIKPHRCTYCNKSFTRKGALGVHVRIHTGEKPFSCETCGRKFSQKNDMLKHTKTHHAKTLRCEQCGELFTKKKDILKHIALHERSDPVIQEYVEVQQHMQSYSVNITCSEFE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00625547;
90% Identity
iTF_00625547;
80% Identity
iTF_00625547;