Dnoa008737.1
Basic Information
- Insect
- Dufourea novaeangliae
- Gene Symbol
- -
- Assembly
- GCA_001272555.1
- Location
- NW:779016-785044[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.045 2.5 7.9 2.4 1 23 391 413 391 413 0.97 2 18 0.00062 0.034 13.7 0.9 2 23 448 469 447 469 0.98 3 18 0.00096 0.053 13.1 0.7 1 23 590 612 590 612 0.95 4 18 0.014 0.78 9.5 0.3 2 23 616 637 615 637 0.96 5 18 0.049 2.7 7.8 4.0 1 23 719 741 719 741 0.96 6 18 0.00034 0.019 14.6 0.4 1 21 747 767 747 771 0.92 7 18 0.0088 0.49 10.1 3.5 2 23 851 872 850 872 0.95 8 18 0.00012 0.0066 16.0 5.2 1 23 928 950 928 950 0.97 9 18 0.00023 0.013 15.1 0.7 1 20 955 974 955 976 0.94 10 18 0.022 1.2 8.9 0.5 2 23 987 1008 987 1008 0.97 11 18 2.3e-05 0.0013 18.2 0.6 2 23 1047 1068 1046 1068 0.97 12 18 2.1e-05 0.0012 18.4 1.6 1 23 1073 1095 1073 1095 0.95 13 18 0.00012 0.0066 16.0 2.9 1 23 1101 1123 1101 1123 0.98 14 18 3.8e-06 0.00021 20.7 0.4 1 23 1139 1161 1139 1161 0.95 15 18 3.1e-07 1.7e-05 24.1 0.6 1 23 1167 1189 1167 1189 0.99 16 18 3.3e-05 0.0018 17.7 0.2 1 23 1195 1217 1195 1217 0.97 17 18 0.00012 0.0068 16.0 4.1 1 23 1223 1245 1223 1245 0.96 18 18 0.0087 0.48 10.1 0.4 1 20 1251 1270 1251 1272 0.89
Sequence Information
- Coding Sequence
- ATGGACGCCGTCGGAATAAATACGTCCGATTCACCACAAAACGAAGAGGAAGGCATTGTGTCGACGGTGGAAATTTGTCGTGTTTGCCTTCTGGGTAACTTGGTTATGCGGGACTTGTTCTTAGAGAGCGAAGTTGTCTCTCTATCGTCAAAAGCAATGAGCTTTGCAAATGTTAAGATGTTACCTGGTGATGGGTTGCCAGCGCGTGTATGTTGCATATGCGCGGACAAACTCGAATCTGCGTATGAATTTAAGCTACAGGTTGAACAGGCTGACACAGTTCTAAGAGAAAGATTCGTTACTATGAACATGAAGGAAGAATTGTTTTTCAACGAAGTCGAAGTACATCTCGATgcagaagaaagaaacgaaggcATCGAAGAGATGCACATAGAGAATCATTATGAAACCACAGTGGAGTCATTGGAAACTATCTCAGGTGATGAAAAGGCGTCCTTTCTTAAGGATCAGTTGGCTTTGTTGCAAGAGGAAAAGTTAACCGGAGAGGAGCAGACTATAAGTGAACAGCATGACAGCTCTATAATGGATGTAGCGATCACGTCGGAACAGATGTTGGATGACTGTTCCAATCAAGACACAGAGAACATTAAAATAGTCAGTGTTATGAGCCAGAACGAAAGGATGTTGAAACATGAGCCTAATGAAAACTGCATTGAGAGTATTTCGACAGTAGAGCATGATTATATATTGCACCAGGAATGTATATTAACAAATGACAGTCAAGAAACACCACAACAGCAAGAAGACCACCACCAGCAGCAGGAggagcagcagcaacagcaggaGGAGCAGCAGCACCAGCAgcaggaagaagaagaacaacAACAACTGCTTTCGGACGAATCGTTTTCGCGCGATGACTGCGTTGAGTACGTGAATTTGTTAGTGAAAGCGACCGATACGACCCACCAAGAGGACGGAGACGAGAATGAGAACAAACCGGAGAAATCGAATGAAACGAATACGAATGTTAAGGTTGAACAAAGTTCTCAGTGTTGTCAAAGCGAGACGAGAAGAAGCAAACGTAAATCGGTACGACGGAACATTGATCCGATGCGAGATTCCGATGaggagaattatttcgaaaatctgAATTTAAGTTCGCGACTAAAGAGGACCGAAGTCTTCGATAAATCGGAAAAGGTCTTCTTCATGTGCTACCTTTGCGATAAGgaatttttatcgaagaaCGTCTTACGGGAACATATGCACTCTCACGAGGAAGTTCGAAAGGCgttgtctttaaaaaaatccCTGGATAAACCGGAGAAAAGTGTCTGCAGTATTGCCAAGACACCACCGTCTGGTAAAAGGTCAAATAAATGTCCTTATTGCGgtaaacaatacatatatataatttcgTTCAGCAAACACTTGAAGAAGCACGAAAAGGAGAAAGAAGAGGCAAACGAGGAACCGATGCCGTtagaaatttcgtttcacgAAGATGAACACAGTTTGGATCTGGAAGATTACGCGGATAAAGCGGATATGAATACGGAATATCTAGAGAAAGGCCGGAGGACGGACGCAACAAGCGAAACAAGGTTAGAGGAAGAGGAACAGGGGCTAGTGGAGGCGGAGGAAAATGAGCAAGAGATTGgggaagaagaggaagagaaagatGGAGCAGAGGATTACGGAGAAGATGAACAGAGAAGAGAAACGAGCAGAGGAGGTAAAGAACGAAACGATAGTCTCAACGAAAGCGACGAACGAAAGAAGCGTGACATTCGGACCGACACATTTCCGTGTGACAAATGTTTAGAGAAATTTTCGACTAGACGCGGTTTACGGAAACATGCGGTATCGCATGTCGTTCTTAGATGTAGCGTGTGCGAAGAAGAGTTTGACTCGTTGGTAAGATTGAGGAATCATCGAGCGAAACATGTTGTCGAAGGTGTACTGTCCGAACAGGATCTGGAAACGGATGCGGAGTTCTTGATTAACAAAGACACGGATGGTTATGATACCGGGAATAAAGAGGGAGGAGAAGGAAATCACGAAGGAGGAAGGAGAAAGGAGAAGGAAggagaggaagaggaaggagAACGCGATGCAGAGGAAATGTCCCGGATAGAGAATGTGTCGAAGAGAAACATCAGAAACACGGAGACGCATTCGGGGATCGACTTCAATTGCAAGGTGTGCTGTCAGCGATTTTCGAGAATGGATTTGTTGCAGAGGCATACGGAGCAACACGAACGCGTTAAATCCTACAAATGTACAGAATGTAATAAGATGTTCGGCAACGAACTTACATTGCGAAACCATCTTATAGCTACGAATCACAAAACCTACATCCACGGACAAGAATACGATCCTAACAAGCGTATCAAACGAGTCGCTGCGAAAGCAGCGCAGAAAATCatcgataaaattaaaacgGAAGACGGCTTAGAAGATTACGACGATGAAGAGGAGGCCGATGACAAAGTGATCGACCGGCATTCCACGGACGGGAGTTACGGTAGAAATAAGCGAGAGACGTCGTCGCAAAAGAGACACCACGGCTGCAAGAAAGAACTGGAATGCGTGAGTTGCAGTAAAAAGTGTAACTCGAAGCAGTCGCTGACGAAACATATGGAGCAACACGTCAAAGAGgagaaaatcgtaaaatcggAAAGGCAAAAGCAAGCCGGAGAGAAGAAAGAACGGCCGAGGAGTTGCGTTAACGAAGGACACGAATTGAACGCGGTTAACAAATATGACGATTACGATTCAGATTTCGAAAGCGGCTTAGATTGGCCAATGGACAATCACGAATGTTCAAAGTGTAAGAAACGCTACAGCACGAAAAAGTCATTGCTTCGGCATCAGTTGTTGCACGAAGAACCGAATTTCGAGTGCGACATATGTAACGTGAAATTCTATCGTAAGGACAAGCTGAAAGCTCACTACGACAAGTGTTCGGAGAAAAACCCAGATCAAGTAAGGAAATGCAACATCTGCGGAGACAGCTTCGAGAATAACGATATACTACGGGAGCATAGATCGAAACACGTCACCGAAGGTATTCTCACCGAAGAAGATTTGAGGGATATCGAGCCACGGCCGGAAGAGAAGAAGATAGGCGAGAAGATCGGTAGGAAAAGGAGGCCCGATATAGTGGGTTTGGAATGTACCGAGTGCAATAAGCAGTATACCTCGAGGAAAGGTCTTTTGCGTCATATTCAAGTCCACGAAGGGAAGAAGTACCTTTGCGACATATGCCCGAAGAAATTCTACAGAAGGGAGCATTTGAAGATACACGTGGCAAAGCACAACATGATAAAACCGTACAAGTGTACGCGCTGCACGAAACGCTTCATCAAAGAGGAACAACTGACGAATCATTTGTCGAAGCATGATCGAAcctttaagaaaaataaagaaactgaCAGCTCCAAGAGATTCCTTTGCGAAATCTGCTCGAAAAGTTTCACTCAGTCAACGACGTTGATCGCGCATCTCAGGGCACACAACGGCATTAAACCGTACGTTTGCGAGGTTTGTTCGCGACCGTTCACGACGAACGCTTATCTGAAGATGCACATGAGAACGCATACACAAGAGCGACCGTACATTTGTCAGTATTGTTCGCGCGCGTTTGCCAGAGCCGACACGCTCGCCAATCACTTAACTTCGCACACAGGCGAGGCGAAGTATCATTGCAAATACTGCCCGAAAAACTTTCGTCGCCTCAAATCCCTTAAGGAGCACGTGTTTATTCACACCGGTCAGAGACCGTACGCCTGCCCGACCTGCGATCGTCGTTTCAATAACAACGGAAGTCGGTACGCCCACAGCAAGAGGTGCAAACAGAATTTCGTTCAGAATCAGAATCGTGGCCAGGCTTTAACGCAAGTGCAATCATCGCAGAATCAGCAAAGGGTGTTGCAGCAGCAAACCGTTCTTAGTCAGGGTCAGGTGTTGAAATCACAGAATATTAAAACCATCACGATCACTAGACAAACGGAACCGATTACCGGCCAACAAGTTACGCAACATCAAGAAATAATAATGCCACTGATCTTTCCTCTAACTGTCACGGTCGCGGATATTAGCGAAGAGGTTATATTACCGGAGGGGACAAAGTTATTTACGACAACTTAA
- Protein Sequence
- MDAVGINTSDSPQNEEEGIVSTVEICRVCLLGNLVMRDLFLESEVVSLSSKAMSFANVKMLPGDGLPARVCCICADKLESAYEFKLQVEQADTVLRERFVTMNMKEELFFNEVEVHLDAEERNEGIEEMHIENHYETTVESLETISGDEKASFLKDQLALLQEEKLTGEEQTISEQHDSSIMDVAITSEQMLDDCSNQDTENIKIVSVMSQNERMLKHEPNENCIESISTVEHDYILHQECILTNDSQETPQQQEDHHQQQEEQQQQQEEQQHQQQEEEEQQQLLSDESFSRDDCVEYVNLLVKATDTTHQEDGDENENKPEKSNETNTNVKVEQSSQCCQSETRRSKRKSVRRNIDPMRDSDEENYFENLNLSSRLKRTEVFDKSEKVFFMCYLCDKEFLSKNVLREHMHSHEEVRKALSLKKSLDKPEKSVCSIAKTPPSGKRSNKCPYCGKQYIYIISFSKHLKKHEKEKEEANEEPMPLEISFHEDEHSLDLEDYADKADMNTEYLEKGRRTDATSETRLEEEEQGLVEAEENEQEIGEEEEEKDGAEDYGEDEQRRETSRGGKERNDSLNESDERKKRDIRTDTFPCDKCLEKFSTRRGLRKHAVSHVVLRCSVCEEEFDSLVRLRNHRAKHVVEGVLSEQDLETDAEFLINKDTDGYDTGNKEGGEGNHEGGRRKEKEGEEEEGERDAEEMSRIENVSKRNIRNTETHSGIDFNCKVCCQRFSRMDLLQRHTEQHERVKSYKCTECNKMFGNELTLRNHLIATNHKTYIHGQEYDPNKRIKRVAAKAAQKIIDKIKTEDGLEDYDDEEEADDKVIDRHSTDGSYGRNKRETSSQKRHHGCKKELECVSCSKKCNSKQSLTKHMEQHVKEEKIVKSERQKQAGEKKERPRSCVNEGHELNAVNKYDDYDSDFESGLDWPMDNHECSKCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNDILREHRSKHVTEGILTEEDLRDIEPRPEEKKIGEKIGRKRRPDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLTNHLSKHDRTFKKNKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKYCPKNFRRLKSLKEHVFIHTGQRPYACPTCDRRFNNNGSRYAHSKRCKQNFVQNQNRGQALTQVQSSQNQQRVLQQQTVLSQGQVLKSQNIKTITITRQTEPITGQQVTQHQEIIMPLIFPLTVTVADISEEVILPEGTKLFTTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -