Basic Information

Gene Symbol
ct
Assembly
GCA_001272555.1
Location
NW:958735-1091429[-]

Transcription Factor Domain

TF Family
CUT
Domain
Homeobox|CUT
PFAM
PF02376
TF Group
Helix-turn-helix
Description
The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 3 5.8e-28 2.8e-24 84.1 0.0 2 72 551 622 550 627 0.95
2 3 1e-32 5e-29 99.3 0.0 2 77 960 1036 959 1038 0.96
3 3 5.8e-31 2.8e-27 93.7 0.0 3 75 1192 1265 1190 1269 0.95

Sequence Information

Coding Sequence
ATGCAGGCCTCTGCGGAGGCCAACTCGCTGGACATTCAGGCCATGCAGTCCATGGACTGGCTGTTCAAGAAGGAGCGCATATACCTGCTCGCCCAGTTCTGGCAACAGAGGGCCACGTTAGCGGAGAAGGAAGTTTCTGCGTTAAAGGAGCAACTGGCCGCGGCAAACGATGGGAATTCGAAGACTGAGGGACACCAATTGTCTCAGACTATACAGGGAAGTGATCAGCTGCAGGTACACGATGCGAGCAACCCCAGGAGGACGCCGAACAGCAACCTGGAGCAGGAGCTGCAAGCGAAAGATAAAGAGATCAGCCAACTGGTCGAAGAAGTGTCCAGGTTACAACAGAGCCTGCAACGTCTTCAGGAGACCAGCGCGCAGGCGACGGTGAGGCTCGAGGAAGAACTCGAGGCCCGTAGACAGCACATCAGCAGACTGGAGAGCAAACTCGAACGACAGAGGGACTATGACGACCTGAAACGGGAGATTAGCGCGCTGAGATCGGTCGATCTCTCGCAGATCCCGACCGGCGAACCGGGCAAGAGCCTGGAGCACCTTCTAATGGAACGCTCGAAGGCGCTTCAGCAAACAGAGATCTTGAAGCCATCGTCCAACACCCCGGACGCGCTCGGTGGACTATCGTCACCCCTGCAGCGCGCTTCCACCGCATCGCCCCACGGGGTCGGGGCTGTACCGCCTTCGTCCCACGTGTCCTCCCAGcaaccaccgccgccgccccCAGCAGCAGTTTCCCTCCCTCCGCGATCCACTCCGACACCGTCTTCGGCGACCTCGACGACATCCAGCCTCCTCTTCCCGCCTCCTCTCCAGAACGTCGAAACCTTCGGTTCCTTCCTCGGCGAAGAGATCGTCGCTAACTGGAGGCGGACATTGGAGAGATCCATCATGAAccaacagcaacagcagcagcaaacaacaacaacaacaacaacaacaacaacaacaacagcagcagcagcagcagcaacaacaacaacaacaacaacaacagcaacaacagcagcagcagcagcagcaacaacaacagcaacaCAAGCTCAACCGCTGATCGGTCTGCATCCTCCAACTAGTACCAGTAGTATAAATCATCTTCCATCGCCCACAGACCCATCGTCCAGTTCCAATACGCCAGCCAAATCGAACACCCCATTAGGAACCACTCCACTGAGTTGCCTTGACGTAGCCGAGAAGGCACCCACGCCGGTCTCAGGCCACGAAACGCCTGCACCACCCACGCCATCGTCTACCACCGCGTTAACATCACCACCGAGCTGTCAACCACCCACCACGATGATCGAAACGACTGCTTCCTCGGTGTCTATCAACGGCGGCAGCATGATACCCGCTATGCCCACTGCACCACCGCCAAAGAGTCCCGCGGACCAGGAATCCTGTCACAACAACAATAACAGTCATCATCTGGCGAACAATAACATCGGCGGCCTAAGTGTTCTGGACACCCTGAAGAGCCCGTTTCGGTTCGACGACAGGACGCATCCATTCAGATTCGGCGATGAGTTCGGAGCGGCCGGTATGGCCGGACGACTCGGCGAATCGTTGATCCCGAAAGGCGATCCAATGGAAGCCAGACTCCAAGAGATGCTAAGATACAACATGGACAAGTACGCGTCCCAGAATTTGGACACTCTGCACATAGCCAGGAGGGTCAGAGAGCTGCTGTCGATACACAACATTGGTCAAAGACTGTTTGCCAAATACGTTCTCGGGCTCAGCCAAGGAACCGTCAGTGAACTGTTAAGCAAACCGAAGCCCTGGGACAAGCTCACAGAAAAAGGCCGCGACAGCTATAGGAAGATGCACGGTTGGGCTTGCGACGAGAACGCTGTAATGCTGTTGAAATCCCTGATACCCAAGAAAGAGTATGTTTCAGGCAAGGAGCAGGGAATGCCAGCGTTCGCGCGCGGACCACAGGAAGGTGGTCCGCCGGATATGAGTGACGAAAGGTTGGCGCATATCCTCTCGGAATCTGGCCATCTACAGATGAGAGGGGAGCACGAAATGTCGAACGACGCGGACAGCAAAAGTCCGAGCAGAATCGGTTGTCCGAGTCCGTTTAATAAAGACAGGCTGGACAGTCAGAACAGGAGACTGAAGAAATACGAGAACGATGACATTCCGCAGGAGAAGGTAGTCAGGATCTACCACGAGGAGCTGGCCAAGCTGATGGGCAGAAGGGTGGAGGATCTTCGTGGCCCGCGAGAGTTCTCTTCCAGTGCGATGTTTCCACACTTTTTCAGCGGTGGCCAAGGTGGACTTCCAGGCATGGAGCGTACACAGGAAGACATCAGATTGGCCCTGGACGCATATCACCGTGAACTGCAGAAATTGAACGCCACACCTGGTCAGACCCCGGCGCTGACTGGACTGCCAGGACTACCCGGACTACCGGGTCTCTTGGCGCTTCAGCAGCAAGCTCTTCAACAGCACCATTTAGCCACTAACGGTGGCGGTGTTCAGGATTTAAGTCTGGGGAAAGTGGACCCTAGAAACAAGATGATCAACGGTGTCTCGGAAGAGGAAAAAGAGAAGATGGAGGAAGCTATGAGACACGCGGGTAGCGCGTTCTCGTTGGTCAGGCCTAAACAAGAGACCACAGCGCCACAGTCGACCCCCAGTGGCTCAAGCGCGAGTTCACCACTTGGAAATTCGATTCTTCCACCCGCGATGACGCCTAGTGAGGAATTCTCTGGTGCGGCGGCGGCCAGTCCTCTCCAGAGGATGGCATCTATCACGAATAGTCTGATCAGTCAACCGTCCACGCCAACTCATCACTCGTCGAACCAGAGGCCACTGAAAGCAGTACTTCCTCCGATCACCCAGCAGCAGTTCGACATGTACAATAACTTAAACACCGAGGATATTGTGAAGAGaGTGAAGGAACAATTGTCCCAATACTCAATCTCTCAACGCCTGTTTGGTGAATCCGTGCTGGGTCTTTCTCAGGGATCCGTTTCCGATCTGCTAGCGCGTCCGAAGCCCTGGCACATGCTCACGCAGAAGGGACGCGAGCCGTTCATTAGGATGAAGATGTTCCTCGAGGACGACAACGCCGTGCACAAGCTGGTAGCCAGCCAGTACAAGATCGCCCCGGAGAAACTGATGAGGACCGGCGGCTACGGTGGCCTGCCTCGTAAGTTTAACTCAGcTTGCGGGACGCCAATGAAGCCTATGCCGCCAACAAAACTGGTACAGGAACAGCTTCAGAACGCCGCGAAGGCACAGGCCGCGGCTCAAGCGGCTGCTCAGGCGGCAGCCCAGCATCAGCAGGAGAACCAAATGCAGCTTGGACCACCTCAACAGAGTCCTCAGCTTCCTCCACATCCGCAACCACCGCCACCGATGATGCTGACTCCTCCGGGTCCTCTTCACCCTCATGCGCAGCTCAGTATGCAGGAGTTGCAGAAGaaacagcaacaacagcaacagcaacaaatCAATCTTCACTCCCCGCATCATCAGATGACACCATCGCCCCTTCGTGGACTTCACCCGCACATTTCACCCAGTGTATACGAAATGGCTGCGTTAACACAAGACCTGGACACGCAGACTATCACGACCAAGATCAAGGAAGCGTTACTGGCTAACAATATCGGCCAGAAGATCTTTGGCGAAGCTGTTCTTGGCCTTTCCCAAGGATCAGTTAGTGAATTGTTGAGCAAACCGAAACCTTGGCACATGCTCAGTATAAAAGGCCGGGAACCCTTCATCAGAATGCAACTCTGGCTATCGGACGCGCATAATGTTGATCGATTGCAGGCATTGAAGAACGAACGAAGAGAGGCCAATAAAAGACGGCGTAGCAGCGGTCCGGGTCACGACAACAGTTCAGACACATCCAGCAATGACACGGCCGAGTTCTACCACTAAGAGCAAAAAGAGGCCCTAAGGCTTGCGTTCGCCCTGGATCCGTATCCTAACGTGGCCACCATCGAATTCCTTGCCAGTGAACTGGCGCTGTCCTCAAGAACAATAACAAACTGGTTCCACAATCATCGGATGAGACTGAAACAGCAGACTCCGCACGGTCAGCCGGAGCCACAGTCCCCAAGGGAACCTGGCCAGCCGTTTGATCCAGTTCAGTTCAGATTGCTGTTAAACCAAAGACTACTGGAGATCCAGAAGGAGAGATTGGGCCTGGGCAACGTACCTCTACCTTATTCTCCGTACTTCAACCCTAACCTCGCTGCCTTAGTGGGCAACGCGTTGAAAGAACAGTGTTCCGGTCTGGACCTGTCGATGAACGCATTGAAAAGGGAGCCGAATCAGGAATTCGAGGACGAAGACGTCGAGGATGCTATGAGCAATCTCGGTAGCGAGGATTCCGAGGGGTCAGCGGGTAGTATAAAGAGGGAACCCGCGGAAACGCCCACTGCGCCGACCACCGTCAGATCGAACAGAAGAAAACCTGCCGCTCCGCAATGGGTGAACCCAGAGTGGCAAGAACCGCCTAGGACAGGTGACGAGGTGATTATCAACGGTGTATGCGTGATGCAAACAGACGATTACGGGGTTAAGAGAGAGGCAGAGGAGACTGTTAGGGTCGAACCAACTCCAGTTCAGGATAGATACGAAGAGGACGCGCAGAGTGACGTTTCCTCCGTTTCTGGTAATAACGGCCCGGACCGGGACAGTCCTCTGCCTAGTCCGAAGTCTGGACAGAACAGTCCAGCGACATCACCCAGGCCGCCCTCCACGCAGCAAATGCTGCAACAATCCACAGAGGAGAGTCCCAAGGACAACGTGGTGAAACACGAACCTGAAGAAACGTGGGATTATTAA
Protein Sequence
MQASAEANSLDIQAMQSMDWLFKKERIYLLAQFWQQRATLAEKEVSALKEQLAAANDGNSKTEGHQLSQTIQGSDQLQVHDASNPRRTPNSNLEQELQAKDKEISQLVEEVSRLQQSLQRLQETSAQATVRLEEELEARRQHISRLESKLERQRDYDDLKREISALRSVDLSQIPTGEPGKSLEHLLMERSKALQQTEILKPSSNTPDALGGLSSPLQRASTASPHGVGAVPPSSHVSSQQPPPPPPAAVSLPPRSTPTPSSATSTTSSLLFPPPLQNVETFGSFLGEEIVANWRRTLERSIMNQQQQQQQTTTTTTTTTTTTAAAAAATTTTTTTTATTAAAAAATTTATQAQPLIGLHPPTSTSSINHLPSPTDPSSSSNTPAKSNTPLGTTPLSCLDVAEKAPTPVSGHETPAPPTPSSTTALTSPPSCQPPTTMIETTASSVSINGGSMIPAMPTAPPPKSPADQESCHNNNNSHHLANNNIGGLSVLDTLKSPFRFDDRTHPFRFGDEFGAAGMAGRLGESLIPKGDPMEARLQEMLRYNMDKYASQNLDTLHIARRVRELLSIHNIGQRLFAKYVLGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHGWACDENAVMLLKSLIPKKEYVSGKEQGMPAFARGPQEGGPPDMSDERLAHILSESGHLQMRGEHEMSNDADSKSPSRIGCPSPFNKDRLDSQNRRLKKYENDDIPQEKVVRIYHEELAKLMGRRVEDLRGPREFSSSAMFPHFFSGGQGGLPGMERTQEDIRLALDAYHRELQKLNATPGQTPALTGLPGLPGLPGLLALQQQALQQHHLATNGGGVQDLSLGKVDPRNKMINGVSEEEKEKMEEAMRHAGSAFSLVRPKQETTAPQSTPSGSSASSPLGNSILPPAMTPSEEFSGAAAASPLQRMASITNSLISQPSTPTHHSSNQRPLKAVLPPITQQQFDMYNNLNTEDIVKRVKEQLSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDDNAVHKLVASQYKIAPEKLMRTGGYGGLPRKFNSACGTPMKPMPPTKLVQEQLQNAAKAQAAAQAAAQAAAQHQQENQMQLGPPQQSPQLPPHPQPPPPMMLTPPGPLHPHAQLSMQELQKKQQQQQQQQINLHSPHHQMTPSPLRGLHPHISPSVYEMAALTQDLDTQTITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDAHNVDRLQALKNERREANKRRRSSGPGHDNSSDTSSNDTAEFYH*EQKEALRLAFALDPYPNVATIEFLASELALSSRTITNWFHNHRMRLKQQTPHGQPEPQSPREPGQPFDPVQFRLLLNQRLLEIQKERLGLGNVPLPYSPYFNPNLAALVGNALKEQCSGLDLSMNALKREPNQEFEDEDVEDAMSNLGSEDSEGSAGSIKREPAETPTAPTTVRSNRRKPAAPQWVNPEWQEPPRTGDEVIINGVCVMQTDDYGVKREAEETVRVEPTPVQDRYEEDAQSDVSSVSGNNGPDRDSPLPSPKSGQNSPATSPRPPSTQQMLQQSTEESPKDNVVKHEPEETWDY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00729955;
90% Identity
iTF_00221825;
80% Identity
iTF_00625402;