Dani014512.1
Basic Information
- Insect
- Dryomyza anilis
- Gene Symbol
- -
- Assembly
- GCA_951804985.1
- Location
- OX638132.1:19239564-19243343[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.6 2.1e+02 3.7 2.0 3 18 56 71 55 71 0.92 2 13 0.0051 0.68 11.5 0.6 1 23 288 311 288 311 0.93 3 13 9.8e-06 0.0013 20.1 0.4 1 23 316 339 316 339 0.96 4 13 0.00027 0.036 15.5 4.0 1 23 344 366 344 366 0.97 5 13 0.00051 0.067 14.7 2.0 2 23 373 394 372 394 0.97 6 13 0.089 12 7.6 4.2 3 23 403 424 402 424 0.95 7 13 0.0066 0.87 11.2 0.3 1 23 430 453 430 453 0.95 8 13 0.024 3.1 9.4 3.6 2 23 464 486 463 486 0.95 9 13 0.0016 0.21 13.1 0.4 1 23 512 534 512 534 0.96 10 13 1.4e-05 0.0019 19.6 4.1 1 23 540 562 540 562 0.96 11 13 4.5e-05 0.006 18.0 0.4 3 23 570 590 569 590 0.97 12 13 0.005 0.66 11.5 1.4 1 23 597 619 597 619 0.98 13 13 1 1.3e+02 4.3 5.1 1 23 625 648 625 648 0.97
Sequence Information
- Coding Sequence
- ATGGAAACATGCAGAACTTGTGCCCGATGTGACTTTGGCAATGATGCTAATTGGTTGGATTTGTTTCATCCCGTACGTTTGGAGGTTGATATGCGAAACATACGCAAGGAATTAGAAATTTGGAAATTGCAGATTAGACCCAACGATGGCCTACCACAAAAGATTTGCACAGACTGCTTTACAAAATTCTGCACCGTTTATACATTACGACGCGAATGCCAAGACGCTCAGATTACATTAAAGAACCTATTTGAGAGTATTGATTCGCAGGGTACAATGGACAGCGATGATGAGCCTAATACCAACATTAATAATCAGGTTACAATAgataatgtaattaaattatatgctGCAATACCAGAAGAGAACAAAATTGACAATAACTCGAACAGTCCAAATTTAGACGTATGTAACCCTGATTCCACAGACAATTTGATTGAGTACTGTGTTGATGAAGCTACTAAATCATTTGATTATAGAATCGACGATGGAAACACCTGTCTAGAAGAGTTGAGCATATTGCCAAACAACTTTGAAACTATACAAAATCAGGATAATTGCTCAATAACTACAATTACTGCCGTGGACCATTTCACCAATGCCACTTGCCAAGCAATACCTATGGCATCAAGTGAAAATATAGTAATTATAACACTACCGCAAAGCAGTGATAACATTACTAACATTAACAATACCACCATCACCACAGATGTTCAAATTGGACAAATTTGTTTAGACGAGAACAAAATTGCCTATGAATGCAAGTACTGTTACAGGACAAAGGATAAGCCAACTGAAAAATATGACAGCGAACAAGCGGTGCTAGATCATATTGAACTATCACACGATAAGAACAATCCATTCGATTGTCCCCATTGTGACGAAAAGTTTCAGGATGCACCATCGCGTACCGTACATCTGAAGGATCAGCATGTAAACAAGCAATACGAGTGTGATGTTTGTGGTAAAAAGTACGCGGATCGCTTCAATTTAAGAGATCACGTGGAAAAGTATCACAGCAAAGCAAGTTACGACTGTAGCTCGTGTGATAAAAAGTGTCCAACGcgcaaaagtttaaaatatcaCATGCGTTGGCATTCACCTGGTAGGCAGTTGAAGTGCAGTCACTGCGATCGTATGTTCATCAGTCTACGACAAATGAAGATACACGAGGAGACGCATACAGATAAAAGACTCACTGAACATTGCACATACTGTGGACAATCTTTTCTACACATTAAGACATTGCGTTGGCATATATATCGGAAGCATGGCGGGGATAAACCTTTCAAATGCGCAGTATGTACAGAAGTTTTTGCATCCTACAAGGAGAAACGTCTCCATATGTTGGAGTTACATGCGACAAATCTGACTGCACGTCAAAAGTCTGAATGCATGGTGTGTCAACGGAAATGCAAGAATGAAGTGGAACTCAAGGAACACATGTGCCAGGAACATGATGAGAATGCCATTGATGTAATTGACCAGAAACGTGTGCTTCAGACGAAAAAACCCAAACAATTCACCGGAGTATTCAAATGTGATAAGTGTCCGCAGCGATACAATTTGCAATCGGCGCTTGACCGTCACTCGGCGGTGCACAGCATCGAACGACCCCATGCATGCACACAGTGCAAGAAGCGATTCAAACGCGTGCAAGATTTGCGATGGCACATGAAAACACACTCGGAGGAGAAAccaaatatttgtgatatttgcGGCAAGAGTTTTGCCCTAAAATATGTTTTGACGCAACACCGCAAGAGTCATGAAGcaaTTGAGAAGAGTTTTCAATGTACTACTTGTGGGCGCACTTATTTATTCGAAAAATCACTGCGTCTGCATGAACGTGTTCACACTGGTAAAACTTATTACAAGTGTGATTTGTGCGGTGATAAATTTGTGACTCACATAAAGTTTCTGtGTCATATGCGGAAGCTCCACGTATCCGATAACAATAAAGATCAAACAAATATTGATGATTTAATTGAGGAAGCATTAAGTGAATAA
- Protein Sequence
- METCRTCARCDFGNDANWLDLFHPVRLEVDMRNIRKELEIWKLQIRPNDGLPQKICTDCFTKFCTVYTLRRECQDAQITLKNLFESIDSQGTMDSDDEPNTNINNQVTIDNVIKLYAAIPEENKIDNNSNSPNLDVCNPDSTDNLIEYCVDEATKSFDYRIDDGNTCLEELSILPNNFETIQNQDNCSITTITAVDHFTNATCQAIPMASSENIVIITLPQSSDNITNINNTTITTDVQIGQICLDENKIAYECKYCYRTKDKPTEKYDSEQAVLDHIELSHDKNNPFDCPHCDEKFQDAPSRTVHLKDQHVNKQYECDVCGKKYADRFNLRDHVEKYHSKASYDCSSCDKKCPTRKSLKYHMRWHSPGRQLKCSHCDRMFISLRQMKIHEETHTDKRLTEHCTYCGQSFLHIKTLRWHIYRKHGGDKPFKCAVCTEVFASYKEKRLHMLELHATNLTARQKSECMVCQRKCKNEVELKEHMCQEHDENAIDVIDQKRVLQTKKPKQFTGVFKCDKCPQRYNLQSALDRHSAVHSIERPHACTQCKKRFKRVQDLRWHMKTHSEEKPNICDICGKSFALKYVLTQHRKSHEAIEKSFQCTTCGRTYLFEKSLRLHERVHTGKTYYKCDLCGDKFVTHIKFLCHMRKLHVSDNNKDQTNIDDLIEEALSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -