Dani021222.1
Basic Information
- Insect
- Dryomyza anilis
- Gene Symbol
- -
- Assembly
- GCA_951804985.1
- Location
- OX638133.1:46019874-46028820[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.079 10 7.8 1.0 2 23 187 209 187 209 0.95 2 17 0.013 1.7 10.3 1.0 3 19 253 269 252 271 0.95 3 17 0.11 15 7.3 0.8 3 23 314 335 313 335 0.92 4 17 0.00072 0.095 14.2 3.1 2 23 342 363 341 363 0.96 5 17 0.0039 0.52 11.9 9.9 1 23 369 392 369 392 0.97 6 17 0.00023 0.03 15.8 1.7 1 23 398 420 398 420 0.98 7 17 1.3e-05 0.0017 19.7 0.1 1 23 469 493 469 493 0.91 8 17 0.67 88 4.9 2.6 1 23 498 520 498 520 0.91 9 17 0.18 24 6.6 0.2 1 23 536 561 536 561 0.92 10 17 7.5 9.8e+02 1.6 1.3 2 19 567 584 566 587 0.81 11 17 0.0017 0.22 13.0 0.6 2 23 595 617 594 617 0.95 12 17 0.00019 0.025 16.0 0.2 3 23 624 645 622 645 0.91 13 17 0.00081 0.11 14.0 1.4 2 23 649 671 648 671 0.96 14 17 1.1e-06 0.00014 23.1 2.7 1 23 677 700 677 700 0.97 15 17 0.13 17 7.1 1.1 1 23 705 727 705 727 0.97 16 17 0.0013 0.17 13.4 0.5 1 23 733 755 733 755 0.98 17 17 0.0025 0.33 12.5 0.3 1 23 761 789 761 789 0.87
Sequence Information
- Coding Sequence
- ATGGAGTGTGAATTGGAATGTGTGCATtgtggagaaaaatgcaatacAGAATTTCAAGAAATATTCGATGATGTTGGAACAGAATTGCAACTTAATGCTCTAATCGAGAAGCACTTTAACTTGAGGATATCCCAGGAGCTACCAAAAGATCAGTGCGTTCTATGTGATCAATGTGTTACTAGGGTAATAGATTTATTCGATATATCAGAACAAATAAATGATAATTGCCCTGATGTTGATGCAAGTGATATTGATGACTTTCCTGAGAATGAAGATATGTCCATGGATGAGATCAATTATCCATTACATGAAGTTGAAACCATAGAATCAGTTTCAACAGAATTTTCCCAGCCGAGTTCATATCCGGAAACATCTATAGATGGATTGGATGAATCTGTTATATCCGATAATTCGAATTTAAAGGGCAAGGAATTTCTAGAGAAGTATAATTTTGTGGAAGATGTCGATAAATCGGTTCAATCCTTAACTGATTTGAATGCCTACGCCGAAACAGCTATAAACAGCAACTTAGAGGAACTACAACTTAGGATACAAAATACATGCTCATTATGTGATATAGTATTGGAAAATCATCAAGATCTACTGATTCATATAAAACATGAACATATGGACGATTCTGGACACATGACCTGTATATTGGACAActgcaacaaaatatttaattgtgaGAGATATTTAGCCAGACATGTTGTTTTAGGCCACTATAAATTAAGCAGTATTTCAATATGTGGAGCATGCCCTGATTGCGGACTTTCATATACTAACTTTATGGATTTTAATAAACACTCGTGTTGCAGGACGTTGAAATGTAGAGGAACAGTAATTAATCATTGCAGTATTTGTAAAATGGAATTCCCTACATTTAGACGgtTTCGTTTTCACATGCAATTCCATCTCGAGAAACGGAGACCAAAGATATGTCTGCTGTGCGAACGGTTCTTTAGCAATGCAGAAGAATTCTACGAACACGTACATTACTTTCATGAACCGGAAGGAAGTTTGATATGTTTTaaATGCGATCGATTTTGTACGACGAAAGAGTTGTTTGAGGCCCATATGCAAAGACATAATATTGAAATGAAATACAAATGCCATTTGTGTCATAAGAAATTTTTCCAGAAACATAGACTAGAAAGTCACATGGAATCTAAACACTCAAGTATTGACCGTTTTAAGTGCGAGTTCTGCAATAAAATTCTTGCAAACAAAGCAAATTATCGCAATCACATAAAATTCCACACACCGGATGCGGAGGTTCAAGTAAATGTTTGTTCATGCTGTGGCCTCATTGGTAGGGAAAGAGACGATTTGCAGGAACACGTAGAGAATGTGAATATAGATTGTTTTGATGCACCCATTGAAGAGGAAATTTTGACTGTGGTTTATGTATGTGAATACTGTGATGCTATTTTTAAAACACAAGCCAACCTGAAAGATCATCGCGCAACTGGCATACACAcagacaaaatatttcattgtccGCTATGTGAGGCTACTTTTGATGATCTGCGAAAGGTTCGTGCACATTGCCAATCGCATGGATTCTATGAGGACTGGAAGAAATCGTTTCCTTTATACAGAATGTACATGTGTGATGTTGGAgATTGCGAACGATCATATGCAAAGATAATTTCTCTGAACAGCCACAAATCGTTGAAACACAAGGAAATACGATTGATATGTTGCAAATGCAATGAAAAATTTCAGAGTAAAGAGATCTTGGACAAGCATTCGGAAAAATGTCAATTGAACGGAAAACTTGTTTGTCAGTATTGTGAAAAGAAATGTCCAACTAACATGTCACTAGCAGTGCATATAGCAAGAAGTCACAACAATAAAAACGTGAACTGTCCCACATGCAAAGCATCATTTAAGGACAAAAAAAGCCTTGAAGCACATATTGATTTTGTGCACGTTCGAGTGGAATGCACATTCTGTAACAAAATGATTAAGAACAAGCGAAATTTGCGGCTGCATGAGCGCGTAAAGCACACCAATATTAAGCGGTATTTCTGCGAACATTGTGGTAAAGGATTTTATAATAAGAGTGATTTAGAGGCCCACACAAAAAcgaaACATTCATCGATCGTATACAATTGTGAAAAATGCTCATTTAGTACTAACTACAAAAACTCAATGGATGTGCATATAGCCAAACACAATAATCAATTTCAGTTCAAATgccctgtgtgtgccagagagTTTACACGCAAAAGTGTAATGGATCTGCATGTGAAGCGGCATCAGGTCCAACGAGAGTTTGTCTGCTCGGATCGTATTTTAAACGGTTGTAATGCGTCTTTTATAACCACATATTTGCTAAAAAAACACATCAAAGAAAAGCACTCAGCAGACGCCAAAGTACAAAATGGTACTGGAACAGCAACTAAACGTAGATACAAACGGACTACAAATATTGTGAAAAACGAAGCAGATAAATTGGAACTCGACGAATCTGCCATTGAAAAAATGAAAGTCTATTTATGTTATGAGGAGGACCAAGAGGAAAATCTTGATTGTATTATTGAAGAGAATAACAGTGATGATAACATGAACTGTTCTGAAGATTTTGCGGTTAATAATGACGATGCAATGCAGGAGTATactattacataa
- Protein Sequence
- MECELECVHCGEKCNTEFQEIFDDVGTELQLNALIEKHFNLRISQELPKDQCVLCDQCVTRVIDLFDISEQINDNCPDVDASDIDDFPENEDMSMDEINYPLHEVETIESVSTEFSQPSSYPETSIDGLDESVISDNSNLKGKEFLEKYNFVEDVDKSVQSLTDLNAYAETAINSNLEELQLRIQNTCSLCDIVLENHQDLLIHIKHEHMDDSGHMTCILDNCNKIFNCERYLARHVVLGHYKLSSISICGACPDCGLSYTNFMDFNKHSCCRTLKCRGTVINHCSICKMEFPTFRRFRFHMQFHLEKRRPKICLLCERFFSNAEEFYEHVHYFHEPEGSLICFKCDRFCTTKELFEAHMQRHNIEMKYKCHLCHKKFFQKHRLESHMESKHSSIDRFKCEFCNKILANKANYRNHIKFHTPDAEVQVNVCSCCGLIGRERDDLQEHVENVNIDCFDAPIEEEILTVVYVCEYCDAIFKTQANLKDHRATGIHTDKIFHCPLCEATFDDLRKVRAHCQSHGFYEDWKKSFPLYRMYMCDVGDCERSYAKIISLNSHKSLKHKEIRLICCKCNEKFQSKEILDKHSEKCQLNGKLVCQYCEKKCPTNMSLAVHIARSHNNKNVNCPTCKASFKDKKSLEAHIDFVHVRVECTFCNKMIKNKRNLRLHERVKHTNIKRYFCEHCGKGFYNKSDLEAHTKTKHSSIVYNCEKCSFSTNYKNSMDVHIAKHNNQFQFKCPVCAREFTRKSVMDLHVKRHQVQREFVCSDRILNGCNASFITTYLLKKHIKEKHSADAKVQNGTGTATKRRYKRTTNIVKNEADKLELDESAIEKMKVYLCYEEDQEENLDCIIEENNSDDNMNCSEDFAVNNDDAMQEYTIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -