Dani012577.1
Basic Information
- Insect
- Dryomyza anilis
- Gene Symbol
- -
- Assembly
- GCA_951804985.1
- Location
- OX638131.1:91052643-91058664[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.011 1.4 10.5 0.6 2 23 81 102 80 102 0.96 2 16 0.0096 1.3 10.7 3.6 1 23 108 131 108 131 0.91 3 16 0.048 6.3 8.5 0.1 3 23 136 158 134 158 0.93 4 16 0.0081 1.1 10.9 0.5 1 20 166 185 166 187 0.95 5 16 1.7e-05 0.0022 19.3 2.7 1 23 195 217 195 217 0.98 6 16 0.011 1.4 10.5 2.7 1 23 223 245 223 245 0.97 7 16 0.00043 0.056 14.9 2.6 1 23 251 273 251 273 0.95 8 16 3.9 5.2e+02 2.4 2.6 2 23 695 717 694 717 0.94 9 16 0.12 16 7.2 0.4 1 23 742 764 742 764 0.95 10 16 0.098 13 7.5 1.5 1 23 772 796 772 796 0.95 11 16 0.029 3.8 9.2 1.1 2 23 801 823 800 823 0.94 12 16 7.8e-05 0.01 17.2 0.3 2 21 840 859 839 860 0.94 13 16 0.0044 0.58 11.7 0.1 1 23 868 890 868 890 0.98 14 16 1.8e-06 0.00023 22.4 2.4 1 23 896 919 896 919 0.98 15 16 4e-05 0.0053 18.1 1.2 1 23 925 947 925 947 0.98 16 16 0.00023 0.03 15.8 2.2 1 23 953 975 953 975 0.95
Sequence Information
- Coding Sequence
- ATGCAGTATCTGCTAAGTGGGCGGCCTTTGGCCGCTTGTCACGGATCACATCAATTACCAATCCTACCACCGGCTACGCaacATACTGAACCTTCCACCTCCGACGCTGCTGCTACTATAGCTGCTGCTATACCCGACAGTGGCGATTTTGCCGCTCTCGCCAACACCGCCCAGCAGGCagccgccgctgctgctgcgGCCATGATGGTGCAGCTCACCACCGATGGCATTCCCAAGTTACACTGTCCGGTGTGCAACAAGGCGCTCATCTCACTCAACGGTTATGTGAAGCATCTAAAGAAACATGAACCGCCGGGCGGTTTTCATTGTCGCTATTGCGAGGCACGTTTCTGTTCCGAGGACGAATTGAAAAAGCATCGCGATGCTGTGCATACCACAATTGCGTGTCGCATCTGCAAAGACATCACCTTTACCACGGAGGAAGATTATCGCGAACACATTCGCTCCATACACGATGGCATCGATCGTGAGATTTTCAAGTGCGACAAATGCGATGCCGAGTACAAGACGTTGGAACCGTTTAAGCGGCATCAGGAGAATCAATGTGGCACCATTAAACCGCACAAGTGCGACGAATGCCCGATGGCCTTCTATACGAAGTATAATCTCAAGCAGCACAAAATAACGCATTCCGGTGAGCGTCGCTTCTGTTGCAGCTACTGCGGCAAGAATTTTCTGCAAAAGGGGCGACTGGTGGAGCACGAACGGTCGCACACCGGTGAAAAACCCTACAAATGCGATGTCTGCGGCAAATGTTTTGCCCATCGGGAGAGCATCGTCACACATTCCTCCATACATACGGGCATCAAGCTGGTCGAGTGCCGTTGCTGTCAATCGCGCTTCTCCTGCTACTCGAATCTGATCAAACATCGCCGCTCGCGACCCGACACTTGCGGACTGCCGGAGTACAATCCGCCCAAAAATCGCGTGCGCACGCGCAAGGCGAgaaTACCGCCCACAATGAATCCCACCTCGGAGATTAAGGTCAGCAacttgaataaaatcatcaaaccTGCCGACAAAATACACGAAAAGAAAACGGGTCGTCCACGCCGTACACCAGAAGAAATAGCAGCAGCGGCGGCAGCGAAACCTAAAACTAGAACTAGAGCCAAACGTGCACCACGCAAACGGAAACAGGCCGAAACGTCTGAATCAGAGGCAGAGTTCACTAGCGAAGACGAGCTGCCAATTGCTGCAAAAGATGCTGATGTTGACGAAGACGACgttgataatgatgatgacgaAGATGAGAGACCGCTGCTGCAACGTGTCACACGCAACAAAAACAAAGttcaaaaaactaaaactgACGCAGCTGTTATGACGCCAACGGTTAATGCTTCGCCGCTCAAAACCGAACGCAAACCCATTTGGAGTGATGCCGATTCAGATGATTCGGTTGAAGACTATCCGGACTTTGATGCGCAGGATGACAGTGATCCGGATGATCCAAAGTACGAGCGATTGGTGCCCAAGGTATCCATAAAAGAGGAGAAATCGGAGGATCAACATGATTTTGAGTACGCCAATGAGTATGTGAACACTACGATGAGTGTTAAATCGGAAGATGAGAATATCTTCAATGAGAAGGATAAATTGCTCGACTGTCTGTTGAACGATGAGCAAGATCAGGGGGAGCGCACTGCATGCTCCGGTCAAATGACTGGACGTCAGTTTCCCAAATTCGATATTGTCAAGGTGGAGAGTTTGCTGGATGAGAGCGAGGTGGTTTACATTAAGGACGAGGAGAGTGCAGAGGACATGCTTAATGTCAAAGAgCCCTCCGATGCATTGACCAAATGCAAAATCGTTCTCGAAGATGTTACCCAAATGTATCCTGCCCTTAAGGATGAGTCTAGCGTCAAAATATTGCGTCGTCGACGTGGACCACGTCGTAGAATAGTAGAGGAGGAAATTGTCGAAAAGGCACCACGTCGCAAATATCGCAAACGTGGCGAGCCAAAAGTAGAGGACAGCAAAGCACCTAAACGCATGTCAAGGTTGTCACAGTCAGAAGTGAAGGCACGCCTGAAAATGATGAAACGTGAAAAATCCTGGCAGTGTCCGCATTGCATCAAATTCTATCATATACGCAAGCCGTTCGAGAGGCATTTACGCGAGGATCACAAGCTGCCGGAGGAGGAGATCAGACAGTTATTTAGGGTGGAGGAAGAGTTAGGCGGGCTTGGCGAGGAGGTGTTTAAATGCAATATATGCTCGAAAATCTATTTGGTCGAAAAGCGTCTGTTGGCGCACATCAAGTtgcatgGTCCCGAGGGCTTGCTAACACACAAGTGTCCCTGCTACTGCTCCATTTACTTCGCCACCAAGGAAGAAGCACAGGAGCACGCGCGTGCACTGCACAAAGAGTTGCTCTACTGCGAGATTTGCGACAAATTCATGACCGGCCACGACAGTCTCAAAAATCATCGCCTCATACAGCACAGCGAACGCTCAACGAGCCCAGCGTCACGCAACGCCAAACGCAATTTGGTCTGCGACAAGTGTGGCAAAAAGTACTCGAGTCGCACATCGCTCACCGATCACGTGCGCAGCGATTGCGGTCGCATACCGCTCTACGAGTGCGGCATATGCACCAAACGCTTGACGACCGCAGGCATTCTCAAGACGCACATGTTGCTGCATAAAGACGATACGCCCTACCAGTGTGATCAGTGTGGCAAAACGTTCAAGGTGAAGGCGCAATACAAGTCACACTTGAAGACACGTCACACCGACTACAAGCCGTTCAAGTGTCAtCTCTGCCCCAAAGCGTATCCATACCGTGAGAGTCTACTCACCCACATGACCGTGCACACAGGCATCAAACGTTTTCTCTGCAACGGTTGCGGTAAACGTTTCACTTGCATTTCTAATTTGCAGGCACATCGCAAAGTGCACGCCGACACGTGTGGCGCATTGCCACTCAATGCCAAGGCTACCCAGTACATGGGCGTGCAGAAGGGCAACTTGCTGATGGGCGCCAAACCGGAGGCCGGTCTTGATTATACCGAGACAAATACTTTGATTGCACGCGAGGTAATCGATCGTGATCAGCCTATGGCACAGGAGCTAAACTATCCGTCGGAACCGTCGGCGCCTATGTTGACGCAGCCGCTGAATTATCGCCAACCGCCGATGCCGGCGCATTTGATGCTGCCGCATCTAGTGATTCCGCCGCACTTTATCGACGATTCACATTCGTCATATTGA
- Protein Sequence
- MQYLLSGRPLAACHGSHQLPILPPATQHTEPSTSDAAATIAAAIPDSGDFAALANTAQQAAAAAAAAMMVQLTTDGIPKLHCPVCNKALISLNGYVKHLKKHEPPGGFHCRYCEARFCSEDELKKHRDAVHTTIACRICKDITFTTEEDYREHIRSIHDGIDREIFKCDKCDAEYKTLEPFKRHQENQCGTIKPHKCDECPMAFYTKYNLKQHKITHSGERRFCCSYCGKNFLQKGRLVEHERSHTGEKPYKCDVCGKCFAHRESIVTHSSIHTGIKLVECRCCQSRFSCYSNLIKHRRSRPDTCGLPEYNPPKNRVRTRKARIPPTMNPTSEIKVSNLNKIIKPADKIHEKKTGRPRRTPEEIAAAAAAKPKTRTRAKRAPRKRKQAETSESEAEFTSEDELPIAAKDADVDEDDVDNDDDEDERPLLQRVTRNKNKVQKTKTDAAVMTPTVNASPLKTERKPIWSDADSDDSVEDYPDFDAQDDSDPDDPKYERLVPKVSIKEEKSEDQHDFEYANEYVNTTMSVKSEDENIFNEKDKLLDCLLNDEQDQGERTACSGQMTGRQFPKFDIVKVESLLDESEVVYIKDEESAEDMLNVKEPSDALTKCKIVLEDVTQMYPALKDESSVKILRRRRGPRRRIVEEEIVEKAPRRKYRKRGEPKVEDSKAPKRMSRLSQSEVKARLKMMKREKSWQCPHCIKFYHIRKPFERHLREDHKLPEEEIRQLFRVEEELGGLGEEVFKCNICSKIYLVEKRLLAHIKLHGPEGLLTHKCPCYCSIYFATKEEAQEHARALHKELLYCEICDKFMTGHDSLKNHRLIQHSERSTSPASRNAKRNLVCDKCGKKYSSRTSLTDHVRSDCGRIPLYECGICTKRLTTAGILKTHMLLHKDDTPYQCDQCGKTFKVKAQYKSHLKTRHTDYKPFKCHLCPKAYPYRESLLTHMTVHTGIKRFLCNGCGKRFTCISNLQAHRKVHADTCGALPLNAKATQYMGVQKGNLLMGAKPEAGLDYTETNTLIAREVIDRDQPMAQELNYPSEPSAPMLTQPLNYRQPPMPAHLMLPHLVIPPHFIDDSHSSY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -