Dani001643.1
Basic Information
- Insect
- Dryomyza anilis
- Gene Symbol
- -
- Assembly
- GCA_951804985.1
- Location
- OX638130.1:13770921-13786684[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.5e-06 0.00019 22.7 0.3 1 23 349 372 349 372 0.97 2 9 1.2e-05 0.0016 19.8 1.4 2 23 403 425 402 425 0.95 3 9 0.00028 0.036 15.5 0.0 2 23 438 459 438 459 0.98 4 9 0.00024 0.032 15.7 3.2 2 23 461 482 460 482 0.96 5 9 0.0027 0.35 12.4 1.6 1 20 488 507 488 510 0.95 6 9 1.1e-05 0.0015 19.9 0.3 1 23 516 538 516 538 0.98 7 9 0.00085 0.11 14.0 2.2 2 23 545 566 545 566 0.96 8 9 0.0043 0.56 11.8 0.9 1 23 572 594 572 594 0.97 9 9 6.6e-05 0.0087 17.5 0.5 1 23 600 623 600 623 0.97
Sequence Information
- Coding Sequence
- ATGTTTTTGAGTACGCTTgatATATCTTATAACTGGGTGAGAACAGTTGACAATAAAAAAGCAGGACCGGACAACAGTATTTCTTTCGAATCGGATATGCGGGGCAAACACTTGAATAGACCTTGTAGAGTTGCTGAAAAAGTGAAAGATATTGTACGCGATCATATTGGTAAATATCCCGTTATAGAAGCATACTACTGCTGGCAAAATATGGAACGAAAGTATTTGGAAGAAGGTCTAACAATGTCCAAAATGTACAGAATGTACAGAGATGAATTGCAAAAGAACGGTGTAGAGCAGTTTGTGTCTCAACAGATGTATCGCAAGATTTTTTACGATGAAtacaattatgaattttattatgcAAAGAAGGACAGATGCGAGCGATGTGAATCATTTGATAATCTTGGCGACAATCAAAGCGTTGAACAACAGACGGTGCAATATAAGCACATCCACAACAAAAGCATGACAAGTGAACTTATGAAGATGGATAAGGAAAGAGCAAGCGACGACAATACAATATGTGTGATTAACTTTGATCTCCAAAAGGTTTTAACAGCCCCAAAAGCTGCTATTGGACCACTCTATTACTTGTCAAAGTTGTGCATTTGGAATTTTACGATATACGATCTCAGCCAATGTACTGGACAATGTAATGTTTGGAATGAAACCATAGGTTTTCGTGGCTCTAACGAAATCGCTTCATTGCTCTGGAAGTATTTTAAGGATAGATCTGAAATGGGCGTACGCGAGTTTATATTGTATAGTGACAGCTGCGGTGAACTGAATCGCAATACTCAAATCTTTAGCATGTTTGTTAAAGCATCTCTAAATTTTGGAATAACGATAACACACAGATTTCTGGAAGTTGGTCACGCACAGTGTGATGTCGATTCAATGCATGTTCGCATTGAGCATCACAGCCGCAAAAAATCGGTGTATACGCAGCAACAATGGTGCAAATTAATGGCAGAAACTAAAGTACCTAATCCCTATGACGTGCATGAGATTGCCACATCCAGCAAACGCACTGAACAAAATTTTCCCTGTAAAATATGCGATCGCATTTACAAATCAAAAAGTGGCCTGCGCGCACATCTCAAGAGCGTGCATGCAGATGAGCTACTCGAGAAACAGGAGCCAAAGGAACCGGTCATAAGAAAACGTACAAAAAAACCCAAATCAGATGAAATAAAACATATGCCTTGTCAAGTTTGCGGTCGCTTCTACACATCGAAGAGTGGTCTACGCGCGCATATGCATAAAAATCACGCGGGcgttgttgtgaaaaaaatacaGGGCAAACCCAAGTGCAGCGAATGCAGCGAAGAATTTGACGATGAGGCCGCACTGGCCACACATATTCGCATCCATTGTGTTTGCGATATATGCGGTAAACCCTGTTCAAATCTGTACGACATGCGTGCGCACAAGAAACGACATAACGGCGTCCGTGCATTCAAATGTAACGAATGTCCCAATAGTTACTATGCCAAAAAGAATCTAATAGCGCACATGATTTGTCACACGGGCATTACACCGTTTATGTGTGAAATTTGCGGACGCGGTTTGCGTGATAAGGGACGTCTGCGTGAGCATATGCGTCGTCATACGGGCGAACGTCCCGCCAAGTGTACCGTTTGTGGCAAATGTTTCTATACCATGTTCGATTTGAGTGTGCACAGTGTGACGCACACCACGGAGCGTCCGTTTGCATGCAATGTATGCCTGTCGACGTTCCAGACAAAGAAGGCGTTGCGTGTCCACAAGAAGGTACATGCGGAGGAGCGAAAGTTCGAGTGCAAAGTGTGCAGCAAAATGTTTTTTACAGCGGGCGTTTTGAATTCACACATGAAAAATATACACACTTTGCGGCGAAATACATTGGATATGTACGCGCTGGAAgttgctaaaaattaa
- Protein Sequence
- MFLSTLDISYNWVRTVDNKKAGPDNSISFESDMRGKHLNRPCRVAEKVKDIVRDHIGKYPVIEAYYCWQNMERKYLEEGLTMSKMYRMYRDELQKNGVEQFVSQQMYRKIFYDEYNYEFYYAKKDRCERCESFDNLGDNQSVEQQTVQYKHIHNKSMTSELMKMDKERASDDNTICVINFDLQKVLTAPKAAIGPLYYLSKLCIWNFTIYDLSQCTGQCNVWNETIGFRGSNEIASLLWKYFKDRSEMGVREFILYSDSCGELNRNTQIFSMFVKASLNFGITITHRFLEVGHAQCDVDSMHVRIEHHSRKKSVYTQQQWCKLMAETKVPNPYDVHEIATSSKRTEQNFPCKICDRIYKSKSGLRAHLKSVHADELLEKQEPKEPVIRKRTKKPKSDEIKHMPCQVCGRFYTSKSGLRAHMHKNHAGVVVKKIQGKPKCSECSEEFDDEAALATHIRIHCVCDICGKPCSNLYDMRAHKKRHNGVRAFKCNECPNSYYAKKNLIAHMICHTGITPFMCEICGRGLRDKGRLREHMRRHTGERPAKCTVCGKCFYTMFDLSVHSVTHTTERPFACNVCLSTFQTKKALRVHKKVHAEERKFECKVCSKMFFTAGVLNSHMKNIHTLRRNTLDMYALEVAKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -