Basic Information

Gene Symbol
-
Assembly
GCA_951804985.1
Location
OX638134.1:24651217-24669875[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.87 1.2e+02 4.5 0.4 1 23 178 201 178 201 0.92
2 22 0.0032 0.42 12.2 6.3 1 23 209 232 209 232 0.96
3 22 0.0025 0.33 12.5 5.1 3 23 246 266 245 266 0.98
4 22 0.0024 0.31 12.6 0.9 1 23 273 298 273 298 0.95
5 22 0.017 2.2 9.9 1.1 1 23 304 327 304 327 0.96
6 22 0.0047 0.62 11.6 0.1 3 21 335 353 334 354 0.94
7 22 2.9 3.9e+02 2.8 0.7 1 15 362 378 362 381 0.83
8 22 4.5 5.9e+02 2.3 0.3 1 23 460 483 460 483 0.91
9 22 0.00099 0.13 13.8 4.1 1 23 491 514 491 514 0.96
10 22 0.0018 0.24 12.9 3.5 3 23 528 548 527 548 0.98
11 22 0.0068 0.89 11.1 0.6 1 23 555 580 555 580 0.95
12 22 0.0048 0.64 11.6 1.3 1 23 586 609 586 609 0.96
13 22 0.0047 0.62 11.6 0.1 3 21 617 635 616 636 0.94
14 22 0.00028 0.036 15.5 3.7 1 23 853 875 853 875 0.98
15 22 0.028 3.7 9.2 3.2 1 23 880 904 880 904 0.93
16 22 0.024 3.2 9.4 1.9 1 23 999 1022 999 1022 0.96
17 22 0.51 67 5.2 3.0 1 23 1028 1050 1028 1050 0.97
18 22 0.013 1.7 10.3 3.0 3 23 1058 1078 1056 1078 0.91
19 22 0.00028 0.038 15.5 3.2 1 23 1084 1106 1084 1106 0.99
20 22 0.00047 0.062 14.8 3.0 1 23 1112 1134 1112 1134 0.96
21 22 0.0018 0.23 13.0 7.5 2 23 1213 1234 1212 1234 0.97
22 22 8.1e-08 1.1e-05 26.6 1.3 1 23 1240 1262 1240 1262 0.98

Sequence Information

Coding Sequence
ATGGGATTGATTAATAATGTGGTCCTGCCAAATGTGATCATATGTCGTAAGTGCGCCGAGGCTCTACTACAAGCAGAAACAATAATTGAAACATGTCGAAAGTCACTCAGTGCATTACTAGATACATCTGTAAAAGAAGAATTACTAGATCTGCAGGAGCACAATTTGTGCCATGAACTGGATGAACCAACAAAAGTTTGTGAAGAAAATCTAATAGCAATTAAATCGAAAATAGAGCCATGCGTTGAGTTTCTTTCGACGACAGTTGATGTAGATGATATAAATAAAGAAGTTGATGATACTGAGGACTACGAAGTTGAAGAGCAGGAATCGAGCTCAAAAACTGAGTTTCCTTCGACAACAGTTGATGTAGATGATATAAATACGTCTTTTGAAGAAGTTGATGATGCTGAGGATTACGAGGAGGAAGAACTGGAATCGAGCTCAAAAACTGAACCAAACAAACGCAAATACAAACGTAAAAAAATGGACAGACGCGTGCTCAAAATTAACACCAAGGCTGACTGGCATTTCAAGTGTGAATTATGTTCATTTGAAAGCGACTTTGCCGCCTATTATCGACGACACCTAATTGATGTGCATCAACTGTTGGCtcccaaaatattcaaatgtcaTCATTGCGATGAATCGTATCAGCGACACCATTCGCTGGGCAGGCATATAGCTGTGGTGCACGAACAGAAAGCACTACCGACGCGTGCCAGGAACACGCTATGCTCTGAATGTGGTAAGAAATTCACATGTCAGAGTTCACTTAAATTACACATGCACATACACACTGGCGAACCGCTTCCATTCAAGTGCGATGACAATGGGTGCAACAAATCCTTTGCCTCGATGGCTTCTTTGCAGTATCACAAGACGAGCCGCCACACTCAGGAGAAAAAGTTCGCCTGCGAAATATGCGGCAACAAGTTTGCGTTGATCTTCAGTTTGCGCAACCACATTAGTAAATGTCACATGAGCAACGAGCTACAGGACTGTCCGAATTGTGGACGCAGCTATCGCTCGCTAAAGAAGTATGAAGAGCATATACTGAGCGAGATATGCAAGAACTGGGTGCATCCATGTCAGTTTCCCAACTGCAGCAAGCGCTTCAGCACGCCCAATGAACAAACAAAAGTTTTAGATGAAGCTCTAATAGAAATTGAATCAAGGGTCGAGCCATGCATCGAGTTTCCTGAATCAACAATTGATGCAAATGATATTAATACGTCTTTGGAAGATGATGATGCCGAGGACTACGAAGAAACCGTGCAGGAATCGAGCTCAAAAACTGTGCGTAATAAACGCAAATATACACGTAAGAAAATTGGCAGACGCGTGCTCAAGATTAACACCAAGGCCGACTGGCATTTCAAGTGTGAACTGTGCTTATTCGAAAGCGACTTTGCGGCCTATTATCGGCGCCATCTCATTGATGTCCACCAACTTGTGGCAccgaaaatattcaaatgtcaTCATTGTGAGGAGTCGTACCAGCGACACTCATCGCTAGGCAGACACATAGCTGTGGTGCACGAGCAGAAACCACGTCCAACGCGAGCAAAGAACACATTATGCTCTGAATGTGGTAAGAAATTCCCATGTCAGAGTTCACTTAAAATACACATGCACATACACACTGGCGAACCGCTTCCATTCAAGTGCGATGACACTGGATGCAGAAAGTCCTTTGCCTCGATGGCATCCTTGCAGTATCACAAAACAAGCGCCCACTCTCAGGAGAAAAAGTTCGCCTGCGAAATATGCGGCAACACGTTTGCTTTGATCTTTAGTTTGCGTACCCACATGAGTAAATGTCACTTAAGCAACGAGCTGCAAGACTGCCCGAATTGTGGACGCAGCTATCGATCGCTGAAGAAGTATGAAGAGCATATACTGAGCGAGAAATGCAAAAACTCGGTGCATCCATATGATGCAACGCAACCCAGTGCATTATGCAACAGTTGTCACACGCAGGCGAAGGCTATAGATGCATTTTTGAGTGTCATTAAAATGGGACAATTGAAGCTGGCCAAGACACGTTCGAAATCAGCTACATTGGCAGAGGTCTTAAAGAAGGAAGACGACTCaaataataaagttaatttgttaaatatagATGACTCAAGCATAGAAGAGGAAAAGTATGACCAAGAAGTTTATCTGCCTTCGTTGACTACATCAAATGTCcccaaaagcaaaaaattgaTTAACAATACTAAAACGTTGAATAAAAAAGACAGTACAAGGCGCAAGCGCAGAGTATTCGGACGCAAAGTACAAACAGCGAACTATGTAACCAACAAAGACCTGCAGCAGATGCCAGTGATACCAGACAAACGCATACGTCGTAAGCCAAAACGCTATTTGGATGAAATTGAAATCAAAACAACTCAACATGCGAATTCAAATCGCACTATTATCACTGCTGCCAATGTGCCCGACTGCAGCTCGTTGATAATGTCGCAGCCAATCGCTGAATTGCGTTCCGACACCGGTAAAGCTTTGGGTGAGCTGCTCGAAGCTGACGACGACCAGTCAAAAGCTTATTTTGTGTGCGAATTTTGTAAAGAAGTGTTTCACAAACAGTATGAGTTCCTGAAACATATACGCACGCATACAAACTGCAGCTACGAATGCGATGAGTGTTTGCAGCGTTTTCAGTTCAAATGCAGTTTCGAGCGACATCAACGAGTGTCTGGACATGTGGGCTTGGGTATTATTGAGAGCATGATGACGCCGGCGGAACAGCAAGAGAAAGTAGTTAAAGTAAATGAATCCGCAAGTCTACCTCTTCGTGATGAACATGAAGTAACTGCAACAGCTATAAACATTACTGTTGGCACAAATGGTCAAATAACTGCAATTGACGCAGAAGCGTTAAAAATCGAAGTGGAACAAAGTTCAGATGCTGCTGACAATGTTGACGGCAGCAAAAATGGGTCTTCTGCCGATAGCAATTTTtccattaaattgaaaaattcaaaatacgcTTGTTTGCGCTGTCAGAAAACCTATGATAGTCCTTGCGCTGTGCGTCGTCACTACAAGTCGGTGCATGTTGGCTACCGGCCGTTTAAATGTAGCAGCTGTGCAGCATCCTTTAAGACCAAATACAGCCACAGTATTCATCAGGCCACACACACGGGAGAGAGACGacacatttgcattttttgtcAGAAGGGTTTTATAACTAAGCACGCATGGAAGGCACATTTGCGCACACACACTGGTGAAAAACCATACAAATGTCCgCACTGCGCCAAAGCCTTCAGCAATCTATGCAATATGGTGGAACACAAGCGCGTGCACACCGGCGAACGTCCACACAAGTGTACGGTCTGCGAGGCCGCCTTCAAAAATGCCTCCCATCTCAAGTCACACAATCAATTGCATTTAAAGGCGACACaaaaaaaactcaccaaatCATCAACGTCAGAAACACAACACAAAGCGGCTGCAACGACGCAGCCGAATACTTCGAGTGCATCAAATACCTCGACTCAATGTCGATCGTTGTCGCTTTTAAATACgcagataaataaaaaagcgaGTGAGGCCAAAAGCGACGTAGTCATTACAATAAATACGCCTGCCGTCGACCTTCATTTAGCAGGCAACGATAAATTACGCTGTCACACGTGTCTCAAGCAATTTAAACAACGTTGTGCCCTCACCAAGCATTTGCGGACCCACACCGGAGAACGTCCCTACAAATGCCCCATGTGTCCGAAGAGCTTTTCGGATCCCTCGAATTTCAAGAAACACAAGATGCTGCATACGAACGCAACCTATGCCTTGAAAACGGCTAGTGCCGCAACACGCgaagcagcaacatcatcattgCATGAACTGCGCCAAATGTTAGAGGAACAGTCGGTGGAGGTGACGCAGCTCTCATCGCAGACACAACACAGTCATTATGCTGCATCGGATCCTGATCCGGATGGCTTGGAAACGTTGCAACGTCTGGATACGCGCACCTTTACGCTTTCATCCCTCGACAGTGTTTTTGCTGATGCCGCTGCAGCTGTTTCTGTTGATCTAAACAAGAGCAATTTGTCCGGGCTGGCTTGGCCTAGCTTTGACAATGCGCTGTTGCCGCCAACTACGCTGGTCGATGCTGTGGCTGATGCGCACAGTTTAGTGCCATTTAGTGATGTGGCATCTTCATCGGCTGCGGAAAATCAATTAGTTTGTATCTCGTATGAGGATCCATCCAATCCGATTGGCAAGAAGACGACCACGTTTTATGTAGTTAATTAG
Protein Sequence
MGLINNVVLPNVIICRKCAEALLQAETIIETCRKSLSALLDTSVKEELLDLQEHNLCHELDEPTKVCEENLIAIKSKIEPCVEFLSTTVDVDDINKEVDDTEDYEVEEQESSSKTEFPSTTVDVDDINTSFEEVDDAEDYEEEELESSSKTEPNKRKYKRKKMDRRVLKINTKADWHFKCELCSFESDFAAYYRRHLIDVHQLLAPKIFKCHHCDESYQRHHSLGRHIAVVHEQKALPTRARNTLCSECGKKFTCQSSLKLHMHIHTGEPLPFKCDDNGCNKSFASMASLQYHKTSRHTQEKKFACEICGNKFALIFSLRNHISKCHMSNELQDCPNCGRSYRSLKKYEEHILSEICKNWVHPCQFPNCSKRFSTPNEQTKVLDEALIEIESRVEPCIEFPESTIDANDINTSLEDDDAEDYEETVQESSSKTVRNKRKYTRKKIGRRVLKINTKADWHFKCELCLFESDFAAYYRRHLIDVHQLVAPKIFKCHHCEESYQRHSSLGRHIAVVHEQKPRPTRAKNTLCSECGKKFPCQSSLKIHMHIHTGEPLPFKCDDTGCRKSFASMASLQYHKTSAHSQEKKFACEICGNTFALIFSLRTHMSKCHLSNELQDCPNCGRSYRSLKKYEEHILSEKCKNSVHPYDATQPSALCNSCHTQAKAIDAFLSVIKMGQLKLAKTRSKSATLAEVLKKEDDSNNKVNLLNIDDSSIEEEKYDQEVYLPSLTTSNVPKSKKLINNTKTLNKKDSTRRKRRVFGRKVQTANYVTNKDLQQMPVIPDKRIRRKPKRYLDEIEIKTTQHANSNRTIITAANVPDCSSLIMSQPIAELRSDTGKALGELLEADDDQSKAYFVCEFCKEVFHKQYEFLKHIRTHTNCSYECDECLQRFQFKCSFERHQRVSGHVGLGIIESMMTPAEQQEKVVKVNESASLPLRDEHEVTATAINITVGTNGQITAIDAEALKIEVEQSSDAADNVDGSKNGSSADSNFSIKLKNSKYACLRCQKTYDSPCAVRRHYKSVHVGYRPFKCSSCAASFKTKYSHSIHQATHTGERRHICIFCQKGFITKHAWKAHLRTHTGEKPYKCPHCAKAFSNLCNMVEHKRVHTGERPHKCTVCEAAFKNASHLKSHNQLHLKATQKKLTKSSTSETQHKAAATTQPNTSSASNTSTQCRSLSLLNTQINKKASEAKSDVVITINTPAVDLHLAGNDKLRCHTCLKQFKQRCALTKHLRTHTGERPYKCPMCPKSFSDPSNFKKHKMLHTNATYALKTASAATREAATSSLHELRQMLEEQSVEVTQLSSQTQHSHYAASDPDPDGLETLQRLDTRTFTLSSLDSVFADAAAAVSVDLNKSNLSGLAWPSFDNALLPPTTLVDAVADAHSLVPFSDVASSSAAENQLVCISYEDPSNPIGKKTTTFYVVN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-