Dani005975.1
Basic Information
- Insect
- Dryomyza anilis
- Gene Symbol
- -
- Assembly
- GCA_951804985.1
- Location
- OX638130.1:90514441-90522829[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 8.6 1.1e+03 1.4 0.1 3 23 245 265 243 265 0.89 2 20 0.25 33 6.2 3.3 1 23 271 294 271 294 0.95 3 20 0.0018 0.23 13.0 0.2 1 23 304 327 304 327 0.97 4 20 7e-05 0.0092 17.4 0.4 3 23 333 354 332 354 0.94 5 20 0.001 0.14 13.7 0.7 2 23 414 435 413 435 0.97 6 20 2.5e-06 0.00032 22.0 1.8 1 23 441 464 441 464 0.96 7 20 0.014 1.8 10.2 1.5 2 23 481 501 480 501 0.97 8 20 0.019 2.5 9.7 4.8 1 23 527 549 527 549 0.94 9 20 0.0022 0.29 12.7 1.2 1 23 558 581 558 581 0.96 10 20 0.00022 0.028 15.8 0.7 1 23 586 608 586 608 0.97 11 20 1.3e-06 0.00017 22.8 1.4 2 23 614 635 613 635 0.97 12 20 0.0016 0.21 13.1 0.9 1 23 641 663 641 663 0.97 13 20 0.0013 0.17 13.4 3.0 1 23 668 690 668 690 0.95 14 20 0.12 16 7.2 1.6 1 23 695 719 695 719 0.97 15 20 0.51 67 5.2 0.6 8 23 784 799 783 799 0.95 16 20 0.11 15 7.3 4.7 1 23 807 830 807 830 0.96 17 20 2.4e-05 0.0032 18.8 1.3 1 23 837 859 837 859 0.96 18 20 3.9e-06 0.00052 21.3 1.0 2 23 865 886 864 886 0.97 19 20 0.0031 0.41 12.2 0.5 1 23 892 914 892 914 0.97 20 20 0.061 8.1 8.1 4.4 1 23 919 941 919 941 0.97
Sequence Information
- Coding Sequence
- ATGCAGTGCCGCTCATGTCTCAGCAGTAGCTCCAACGAATACATTGACATGGAATCATCCATGGCCGGCGACTATTCATATCTGGAATGTTTCAATATCTGCACGCAGTTGAAGGCGAGCAACGCAGATAATTTGCCGGTGACAATGTGCACCGCCTGCTCGCATGATCTGCAGATTGCGTTTGATTTTGTACAGGCAGCGCGACAGGCAGATGCGGAGCTACGCgataatttaatgaataatgtaCGAAAGAACTATGATGAAATGGAACGACTTGAGTATGTGGAAAGCATCGAAGAAGGAGATGGCGAAGAGGTGGAGGAAGAACATGTATTGGAACTGCATGAAGTCGAAGAAGAGTTGGACGAGATGGCGACGGAGGAATGCACACAAATGGAAATTATTCAGGAACACTTAGATCAACAAGAGGAGGAGGTAGAGCAATTAGAGTATAGAGAGCTAGAAACTGTAGATGAACAAATGCTTGATGACACTACTATAGAGTCGGAGTCGTTTATTGTGGAAAAGCCGGAAACAGTTGTTGTAGAGCTCGAGTCAACACAAACAAAGCAGCCAGTGACAAGACAACGTTCGGCGGCTGCGGTCAAAGTAGAGACTCATGATGCAGCTGCATCATATCCGCAGGATGAAGTGGATGATGAGTATCTCATAGAGTATAGTGAAGCGGATGATGCGGCGTCGACCGCGCAACATCAAGGCGCAAAATGGCGTTGCATAGAGTGCAAACGTGTGCTACGCGGCGATGTTTCCTACGAGGGACACATGAATATGCATAAAAATGTGAAACCCTACAAATGCACGCAATGCAAGAGCGCATTTCGTTGCAAGGTGGCGCTGGAGCGTCACGCGAGCAAACGACACGAACCCAGCAAAACGCAGCAGAAATGTTTCTCATGTGATCTTTGTACGCAGGTCTTTCGATTGGCAACGCTGCTGTTGGAGCATCGACGTgtggaacacaaaaCGCTTGAAGCCTGCGGCAAATGCTCAAAATCCTTCAATACAAAAGACTCGCTAGCCGAACATATGACACTCATACATCCGCCCACTAATACCACACCCATAGAGTGTCCGTACTGcgatcagcagcagcaaccacCAGTTTCTTTAACGCGCACCCGTCTCATCGATCATTTACGTACACAACATCCAGCCGAACATCGCAAACATTTACATACTGTGGGTCGACCCTGCGATGAGAATCGCATTACTCCATGGCAGTGCGAAGAATGTTTTCGTTATTATCGCACTGAGGCGCTTCTCAAAGATCATCGCAATACACATACCAACGAGAGGCCGCACGCGTGCAATATTTGCGACAAACGTTATTTTACGGCAAGCAATTTACGCAGTCACATCCGTTCGATGCATCCGCTAGAGTATGAGCAACGTCTGTCCGAAAACTCAGATGCCATGGTGCAGTGTGAGCTCTGTAAAAAGCGTCTGCTGCAAAAGAATCTTGAGAAACACATGACGACACACGAGCGCAAACAGAAGGATGCGGCAGAGGGCAGCAGCagtggtggtggcggcggcggcaACAGTGAACCAGTCAAATTCTTGTGTGCCTATTGTCcaCGCGaatgcaaaaatcaaaaaacactcACACACCACGAGAAACTACATCAGAGTGCTGCCTCGGGCATCAGCTATAATTGTGTCGACTGTGAACGTAACTATGCAACGCTGCAACATCTGGAACAGCATCGCAAGCAGGCGCACAAGGAACGTGATCATGTTTGTGCCATTTGTGGCAATGCTTTTAAACTAAAGAATCAACTGTTGAATCATATGAAATTGCATTTGGAGAAGAATATTCAATGTCCGCATTGTGATAAGAAGTATGCgcgtcaatttgatttaaatgtACATTTGCGTTCACATACCGGCGAACAACCGTATGCGTGCACATTGTGTGACAAACGTTTTGCCATCAAAGTGCGGCTCACGTATCATCTGCAAAAGCACATGGGTGTCAAGCATCGCTGTAAGGAGTGTGGCGCTGAATTCAATTCAAAGCAAAAACTTAAGGCCCACTCGTACAAACACACGGGCATGCCTTACCGCTGTGAGACGTGTGATAATCATGGATTTGCCAATCGTGATGTTTTCAAACGTCACCTGTTACGCGTGCACAATACAACAATGACTGATGAAGCGCTCGTCGAAATGTTCCAACGCAATACAGGGAAAACAACGCGCATACGACCAATCGATGAAATCGACAGCATGGTGTTGAAGAACGAGGATCAGCACTTGGTAGAAAATGTGGAAGAGCGATATATGATCACTGACGAAATCGGTATTGTCGAGGAAGTAATTTTAACCAAATCATTTGCGAGCAAAACGAAATTACGCACCCACGAGCAAGTGCACAATCCACAACGCACGCGTCATCACTCGTGCGAGTATTGTACAGCAAAATTCTACACACAATACGATCGTGTGCATCATGAGCGTCGTGTGCACTTGGCCAATGAGCGTGCACACGCTTGTACGGTCTGTGGCAatacatttaaagaaaaatcacAATTACGCAATCATTTGCTTGTGCATACCGAGAAAACGCTGCAGTGTGCACATTGTGAAAAGAAATATGCACGTCAACCGGATCTAAATGTGCATATGCGTACACACACGGGCGAGCTACCTTATGCGTGTGAGCTTTGCGAGAAACGTTTTGCCATTAAAGTGCGACTCACATATCATATGCAACAACATTTGGGCGTTCGGCATAAGTGCGAACATTGTGCTGCACTCTTCAATAGTCGCGGTAAACTGCGCATGCATATGTTTAAGCACATTGGCATGCCGTATCGCTGTGCCGAGTGTATAGGCGTGGAATATAACAAGCGTGAGAGttttcGTTTACATATAACGCGTGTGCACAATCGCGTGCCCAGCGAGGATGAgttaaatacgaattttgaacGTCACACCGGCAAAGCGATACGTTTTAAGGTTGTGGGCAACGAAAGGCAGCAACCGGAAGAAACAGCTGATGACATAAAACATGAGGAAACTGATAGTTGTGTGGTGGATGTTGAGTGA
- Protein Sequence
- MQCRSCLSSSSNEYIDMESSMAGDYSYLECFNICTQLKASNADNLPVTMCTACSHDLQIAFDFVQAARQADAELRDNLMNNVRKNYDEMERLEYVESIEEGDGEEVEEEHVLELHEVEEELDEMATEECTQMEIIQEHLDQQEEEVEQLEYRELETVDEQMLDDTTIESESFIVEKPETVVVELESTQTKQPVTRQRSAAAVKVETHDAAASYPQDEVDDEYLIEYSEADDAASTAQHQGAKWRCIECKRVLRGDVSYEGHMNMHKNVKPYKCTQCKSAFRCKVALERHASKRHEPSKTQQKCFSCDLCTQVFRLATLLLEHRRVEHKTLEACGKCSKSFNTKDSLAEHMTLIHPPTNTTPIECPYCDQQQQPPVSLTRTRLIDHLRTQHPAEHRKHLHTVGRPCDENRITPWQCEECFRYYRTEALLKDHRNTHTNERPHACNICDKRYFTASNLRSHIRSMHPLEYEQRLSENSDAMVQCELCKKRLLQKNLEKHMTTHERKQKDAAEGSSSGGGGGGNSEPVKFLCAYCPRECKNQKTLTHHEKLHQSAASGISYNCVDCERNYATLQHLEQHRKQAHKERDHVCAICGNAFKLKNQLLNHMKLHLEKNIQCPHCDKKYARQFDLNVHLRSHTGEQPYACTLCDKRFAIKVRLTYHLQKHMGVKHRCKECGAEFNSKQKLKAHSYKHTGMPYRCETCDNHGFANRDVFKRHLLRVHNTTMTDEALVEMFQRNTGKTTRIRPIDEIDSMVLKNEDQHLVENVEERYMITDEIGIVEEVILTKSFASKTKLRTHEQVHNPQRTRHHSCEYCTAKFYTQYDRVHHERRVHLANERAHACTVCGNTFKEKSQLRNHLLVHTEKTLQCAHCEKKYARQPDLNVHMRTHTGELPYACELCEKRFAIKVRLTYHMQQHLGVRHKCEHCAALFNSRGKLRMHMFKHIGMPYRCAECIGVEYNKRESFRLHITRVHNRVPSEDELNTNFERHTGKAIRFKVVGNERQQPEETADDIKHEETDSCVVDVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -