Dani024020.1
Basic Information
- Insect
- Dryomyza anilis
- Gene Symbol
- -
- Assembly
- GCA_951804985.1
- Location
- OX638133.1:103347471-103350592[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00058 0.076 14.5 0.1 1 23 352 375 352 375 0.93 2 12 0.0012 0.15 13.5 3.8 1 23 387 409 387 409 0.99 3 12 3.5e-05 0.0046 18.3 0.6 1 23 416 438 416 438 0.97 4 12 9.4e-06 0.0012 20.1 1.1 1 23 444 466 444 466 0.98 5 12 7.6e-05 0.01 17.3 1.3 1 23 473 495 473 495 0.98 6 12 1.4e-05 0.0019 19.6 0.5 1 23 501 523 501 523 0.97 7 12 0.00011 0.014 16.8 0.2 1 23 529 551 529 551 0.97 8 12 2.9e-06 0.00038 21.7 1.0 1 23 557 580 557 580 0.97 9 12 0.00065 0.086 14.3 6.7 1 23 586 609 586 609 0.96 10 12 0.00047 0.062 14.8 5.8 1 23 615 637 615 637 0.98 11 12 9.4e-05 0.012 17.0 0.5 1 23 643 665 643 665 0.96 12 12 0.0015 0.2 13.2 0.3 1 22 671 692 671 695 0.92
Sequence Information
- Coding Sequence
- ATGCAGGCCGTCAAGTGTTTTCTCTGTGACCATGACTTTCTGGAAGGCGAGCAAACCTGGCTGTTGTTCGAGCGGCGTCTGCAGGAGGACGGCCAGCCGGAGTGCGCGTTGGCGGCGATATTAACATCAGCGCTGGGCAAAGATATCGAAGAGCATAGTGCGCATtccaagCTTCTCTGCCACACTTGCAATGCGCTACTGCTCGAGTTCGAACGCATTGAGCTGCGCTTTTACGAAATGCGTTTCCGCATACTCAGCGCATACAACAAAACGGCGCGACTCAACGATCTGCTGCCCATTGCAATAGAGATAAACGGCGTGCTGCAGGATACAGCGACGCTGGAGGAGATGGGCGCGGATGAACTGCTCAATACGACGGCGCCAGAGCTGTTGGCAGCAGCACCCAAGCTCGACTATACTGAGCTAATGTGCGAGGAGCTACCCTTGGATGCGATTGTGGAACTGCCGGAGGAGGATGATGAAACCCTTAACACAGACATAGTGCTGCCACATAATGCTCCAATTGAACTGGATGTAGCACCGTTAGATGAAGACGCCGATGCCATAGTCTTCGGTGGTTTGCATCCATTAAAACTAGAaactgtgaacatgttgcaatatGAGGCCGTCGAAGAGGTGGGCGATAGCATGATTGATGTAGAGGATATTGACTTGGATGCAGATGAAATTTATAGCGAAATCATTGAGCATACGGCGCAGCAATATGTGATAGAGGAAGTGAACGGCGAGGATCTGGAGCAGGAAGAGGCCAGTATGGATAGTCAGTACATGCAGAGCTACAGCAGCAACAGTGAGCAGCATACCGCTGACTTGCTACTCCAAAGTGCAGCTGCCACTGCCACCACCAACGCCGACAACGTCGTCGCCCTGCCAAAGCGTACGCCGCGCCAACTCAAGGACACTTCCACCACTTCGATGTACGAGCACCAGGGCGACATTTACACCTGTCTGCTGTGCGCCAATGAGCCACCGGAGGAATTTACGCCCAAAAGTTTCGCGGAACACATGCGCGCTGTGCACAATTATCGCTTCTATACGTGTGATCTCTGCGGCAGCGGTTTCGCGCGTCGCCAGGACCTCAACGATCACATAGACGCAGAGCATGGCAGCCAGGAGGCGGGCGGCGTCGGCGGCAACTATGAATGCGAAACGTGTCACCGAATTTTCGACAACTATCGCCTGTTTCGCATACACAAACGCATGCATTACAGCAGTGCCAAGCAGTTCGCCTGCACCGAGTGCGACAAGAAATACAGCTCAAAGACGCTGCTCGATGGGCACATGAACATGCACACGGGCGCGCGTCCTTTCAAATGTTCCCAATGCCCGAAAGATTTTGCCTCGAAATACACGCTTCAGACGCATGCGAAAATACACAGTGACCGAGCGCGTCCCTATCGCTGCGATCTGTGCGACAAGGCCTTTCTGAATCAACAGAATCTGAACCAGCATCGCAAGCTACACATGGGCATCAAGTCCTTTGTATGCGACATCTGTCAGAAGGCTTTCGGTACGCAGCACAATCTCTATGTGCATCAGGTGGTGCATTCGGGTAACAAGCCTTTCATTTGCCGCACTTGCGGCAAGGCTTTTGCGCGTCGCGCTGAAATCAAGGATCACGAGCGTATACACACCGGCGAGCGTCCTTTCAAGTGTGACCTCTGCGACTTGGCCTTTGCGCAGCGTTCGAATCTGACGTCACATCGAAAGTCGACGCACCTCAACGAGAAACTGCATCAATGCACGCATTGCACGCGCTCCTTCAAGCGCCGCCGTCTGCTCGAGTATCATGTGCAGTCGACGCACACGGGCGAGCGGCCGCACAAATGCGATCACTGTGAGGCGACGTTCGTCTACCCGGAGCATCGCAAGAAGCACATGCGGATTCACATGGGCATCAAGCCGTACGCCTGTGAGGTCTGCGGCAAGCAGTTCAATAGTCGCGACAATCGCAATGCACATCGCTTCATACACAGCGACAAGAAGCCGTACGAATGTCTCGAATGTGGCGCGGGCTTCATGCGCAAGCCACTACTGTTGGCGCACATGCAGCATACGCGCCACTCGAACGACACAATCATTGTGAATCAGCCGCAGATTGGCATCAGTCAGGAGGACATCAGTCAAAGCAGTAGCAATGCCGCTGACATAGATTTAAAGCATATTATAGACGGTGATGAAGAGGATGATGAAGACATTGAAGACGCTGGCGACAATGTGGAGgaggacgatgatgatgacgaaaGTTATGCGCATATGATGCAGCGCGCCGAAAGCATGCTGGCTGCTGTCGGCAACAATGCCGCGGATGATGACAGCAGCAATGATGCGATGGCACGCGTCAGCGGCCAACTGATTAAAGATGAAATTGGCGACGTCAAGTACCTGCAATTCGAGGAGCTCGATGGCGATGGCCATCAAACGCTCACTTGGGTCGATATAGGCGATAAGCATAGTTGA
- Protein Sequence
- MQAVKCFLCDHDFLEGEQTWLLFERRLQEDGQPECALAAILTSALGKDIEEHSAHSKLLCHTCNALLLEFERIELRFYEMRFRILSAYNKTARLNDLLPIAIEINGVLQDTATLEEMGADELLNTTAPELLAAAPKLDYTELMCEELPLDAIVELPEEDDETLNTDIVLPHNAPIELDVAPLDEDADAIVFGGLHPLKLETVNMLQYEAVEEVGDSMIDVEDIDLDADEIYSEIIEHTAQQYVIEEVNGEDLEQEEASMDSQYMQSYSSNSEQHTADLLLQSAAATATTNADNVVALPKRTPRQLKDTSTTSMYEHQGDIYTCLLCANEPPEEFTPKSFAEHMRAVHNYRFYTCDLCGSGFARRQDLNDHIDAEHGSQEAGGVGGNYECETCHRIFDNYRLFRIHKRMHYSSAKQFACTECDKKYSSKTLLDGHMNMHTGARPFKCSQCPKDFASKYTLQTHAKIHSDRARPYRCDLCDKAFLNQQNLNQHRKLHMGIKSFVCDICQKAFGTQHNLYVHQVVHSGNKPFICRTCGKAFARRAEIKDHERIHTGERPFKCDLCDLAFAQRSNLTSHRKSTHLNEKLHQCTHCTRSFKRRRLLEYHVQSTHTGERPHKCDHCEATFVYPEHRKKHMRIHMGIKPYACEVCGKQFNSRDNRNAHRFIHSDKKPYECLECGAGFMRKPLLLAHMQHTRHSNDTIIVNQPQIGISQEDISQSSSNAADIDLKHIIDGDEEDDEDIEDAGDNVEEDDDDDESYAHMMQRAESMLAAVGNNAADDDSSNDAMARVSGQLIKDEIGDVKYLQFEELDGDGHQTLTWVDIGDKHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -