Dani018444.1
Basic Information
- Insect
- Dryomyza anilis
- Gene Symbol
- su(Hw)
- Assembly
- GCA_951804985.1
- Location
- OX638132.1:98080439-98086390[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0003 0.039 15.4 1.1 1 20 138 157 138 158 0.95 2 12 7.1e-07 9.4e-05 23.7 0.4 2 23 209 231 208 231 0.94 3 12 0.027 3.6 9.2 0.2 1 23 237 259 237 259 0.96 4 12 3.1e-07 4.1e-05 24.8 2.3 1 21 266 286 266 287 0.95 5 12 1e-05 0.0014 20.0 1.6 2 23 299 320 298 320 0.96 6 12 3e-05 0.004 18.5 3.0 1 23 331 353 331 353 0.98 7 12 1.6e-05 0.0021 19.4 0.8 1 23 359 381 359 381 0.97 8 12 1.7e-05 0.0023 19.3 0.7 1 23 387 409 387 409 0.99 9 12 2.1e-07 2.8e-05 25.3 2.9 1 23 415 437 415 437 0.98 10 12 0.00037 0.049 15.1 1.3 1 23 441 463 441 463 0.95 11 12 0.00071 0.093 14.2 3.3 1 23 477 501 477 501 0.93 12 12 0.12 16 7.2 0.3 3 23 516 537 514 537 0.94
Sequence Information
- Coding Sequence
- ATGAACATAAAACAAGAGAAAACGCGCTCCACGACGGCCATTAAAATACTAAACGATGAGAAGATCATCAATACACCGACACCGACGCCCATTATCATGACAACGGTGCCACTGTCGCCCACCAAACAAATCACCATGTCCATTGCGAAGAGCAAACCGGTGCCGCAACCGAAACAAAACAACATGGATCACTATATGTTGCAAACGGTGAAGGGCGAAGCCGATGCCGAGGGCTACGTTGGcgaaacaattgattttataCTCACCGACAGTAATGGCGAGGATAAAACGTTTGGACTGGGCAATCCCAGTGGCGAAATTACCGAGGAATTGCATCTGAGCGGCGAGGAGGAGGATGATGAGGGCGATGACCACGATGGTGGCGAGATGAAGACGGAAGAGATTATCGAGCATGTGTGTGGCAAGTGCTACAAGACGTTTAGGCGCGTCAGCGGGCTTAAAAAGCATTTAGATTTTTGTCGCTTCGACAGCGGCTACCATCTGCGTAAGGCGGAGATGTTTAAGAATCTGCAGAAGATCGAAAAGGATGCAGTGATCATGGAGAACAAGGATATTTGCTTCTGTTGCGGCGAGAGCTATGATACATTCCATCTCGGTCACATCAGCTGCCCCGACTGCCCCAAATCGTTCAAGTCTCAGTCCAGCTACGAGCGCCACATCTTCATCACGCACTCCGAGTTCAACGATCATCCGTGCGAAGTGTGCAATGCGAAGCTACGCAGTGAGAATCTACTCATACTGCACATGGAACAGCATCAGACACGCGGCAAACCCTATGCGTGCAAAATATGCGGCAAGGAGTTTACGCGCTCCTATCATCTGAAGCGTCATCAAAAGTATTCATCATGCTCGGCCGACATCAGCGATGCAATGTCTTGCAAGGTCTGCCAGAAGACATTCTTTCGGCTGGACAATTTGCGCGCCCATCTGAAGCAGCATCTGGGCGATCATTCGGCGAAGAAGAGCGAATACATGTGTCCGATTTGCAAGAATTGTTTCTACAGTTTGTCGACATTAAACATACATACGCGCACACACACGGGCGAACGTCCGTTCGATTGTGATCTGTGTGACAAAAAGTTTCCCTCGTTGGTGGCTTTGAAGAAACATCGTCGCTATCACACTGGCGAGAAGCCGTACACCTGCTCTGtgTGCTCGCAGTCCTTTGCCGTCAAGGAGGTGCTCAATCGACACATGAAGCGTCACACCGGTGAACGTCCGCACGTCTGCACCGAGTGCAAGAAGAGCTTTATACAAGCCACACAGCTGCGGAATCATATGCGAACGCATTTGCGTCCATTTTCGTGCATTGAATGCGTTgagaaatttaaaactaaaaaacaACTGGAGCGACATGCCCGTACACACCAAGTGAAATCGAAAACGCGCACCAAAATTGCGTCGGACTTCAGTTGCCGCGTCTGCAACATAAACTTCAAACATTTCGAGTCCTTGACGCGGcatttgaaaacaaaagcacatCTTACATTTGTAGCCATTGCCAGAAAATCTGAACGCACTGATTGTGCGCTGTGCGAAAAGAATTTCAATACCGTACAAAATCTAGAATTTCACATCTTGAAAGTGCACGAAGTGGACCCAGAAGAGTTTATCAATGAGAAGCGTTTGCAAAAAATAGAACCAGCAGATCTTGCGGAAATGGCTACCATAGCAGAGGAGAATGATGTGGATGAGGATGAGGTGCCTCTCGCAAAAAGAATCAAACAAGAGAAAATCAGTAATAATGTCGCTGTTGTTGCCAATGTTGACGATGCTGCTGACGATGTTGAAATGTTTGATGCCGAACactttgaatttatttcaactaaaactattaaacaaaaacataatgcTGCGCCCAATGAGCTGAACAGCGGCGATGTTGTATTGCAAGAGTTTATTTTGgacgaaatgccaacatcgtcCAAGGGAGAACAAACAATATTCATGCATAATAATGATGCATTCACGGTTATTCCATTGGATTCTGATATACTGGCGGAGACAATCAGAACAGCGCCGGAGGCTGCGTTGCAAGTTACCGACTCTAAGACGCCGCCACGTAAGTCGTTGGCTGAGAGTTTAGCAGCTGCCATCGCCGATGAAGAGGAGGAGGAAGCGGCGGCAGAGGGCACAAGTGCCGCAGATTTGTCCAATGCGGAGGACGAGAAGCTCAAGGATAATGTTTCCAAACTGTTGGACATGTTGGTGGATAAAATGACGCTTAAGAAATTTGGCTGGCCTGAAAATTCTGTAGAAAATgTGCTCTGCAAAGTAATTGAAAATTGCGGACATGACTTGTCCAAGGGCTCTGATGAATACAGCAACTGTGACTTCTCCACACGCATGCGCGAGTATGTGAAGCTCTTGTTTACGGTGGTCATACAAAACGATTCCATCAAGGAGCTACTCAACAACTATCCCATCGATGAGGTCATTGAATATGTTTTGGGCAACGATGACGACGAAGACGACGATGATGAAGATGTGGTAGAAGTGGCCGGTGAAGCTGCTGACGACAACGTTGACGAAAAATAG
- Protein Sequence
- MNIKQEKTRSTTAIKILNDEKIINTPTPTPIIMTTVPLSPTKQITMSIAKSKPVPQPKQNNMDHYMLQTVKGEADAEGYVGETIDFILTDSNGEDKTFGLGNPSGEITEELHLSGEEEDDEGDDHDGGEMKTEEIIEHVCGKCYKTFRRVSGLKKHLDFCRFDSGYHLRKAEMFKNLQKIEKDAVIMENKDICFCCGESYDTFHLGHISCPDCPKSFKSQSSYERHIFITHSEFNDHPCEVCNAKLRSENLLILHMEQHQTRGKPYACKICGKEFTRSYHLKRHQKYSSCSADISDAMSCKVCQKTFFRLDNLRAHLKQHLGDHSAKKSEYMCPICKNCFYSLSTLNIHTRTHTGERPFDCDLCDKKFPSLVALKKHRRYHTGEKPYTCSVCSQSFAVKEVLNRHMKRHTGERPHVCTECKKSFIQATQLRNHMRTHLRPFSCIECVEKFKTKKQLERHARTHQVKSKTRTKIASDFSCRVCNINFKHFESLTRHLKTKAHLTFVAIARKSERTDCALCEKNFNTVQNLEFHILKVHEVDPEEFINEKRLQKIEPADLAEMATIAEENDVDEDEVPLAKRIKQEKISNNVAVVANVDDAADDVEMFDAEHFEFISTKTIKQKHNAAPNELNSGDVVLQEFILDEMPTSSKGEQTIFMHNNDAFTVIPLDSDILAETIRTAPEAALQVTDSKTPPRKSLAESLAAAIADEEEEEAAAEGTSAADLSNAEDEKLKDNVSKLLDMLVDKMTLKKFGWPENSVENVLCKVIENCGHDLSKGSDEYSNCDFSTRMREYVKLLFTVVIQNDSIKELLNNYPIDEVIEYVLGNDDDEDDDDEDVVEVAGEAADDNVDEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -