Dani001625.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dryomyza anilis
Gene Symbol
-
Assembly
GCA_951804985.1
Location
OX638130.1:13659895-13665823[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.055 7.2 8.3 1.5 1 23 44 66 44 66 0.95
2 16 0.0035 0.47 12.0 1.6 1 22 191 212 191 214 0.90
3 16 1.9e-05 0.0025 19.2 0.5 1 23 220 242 220 242 0.99
4 16 0.00018 0.024 16.1 4.8 3 23 250 270 249 270 0.97
5 16 3.2e-05 0.0042 18.4 0.5 1 23 276 298 276 298 0.98
6 16 6.3e-05 0.0083 17.5 2.1 1 23 304 326 304 326 0.97
7 16 0.00016 0.022 16.2 0.8 1 23 332 354 332 354 0.96
8 16 1.1e-06 0.00015 23.0 0.4 1 23 360 383 360 383 0.97
9 16 0.24 31 6.3 2.3 1 23 453 475 453 475 0.94
10 16 0.00039 0.051 15.0 0.7 1 23 608 631 608 631 0.93
11 16 2.1e-05 0.0028 19.0 2.4 1 23 637 659 637 659 0.99
12 16 9.8e-05 0.013 16.9 1.3 3 23 667 687 665 687 0.98
13 16 1.7e-06 0.00023 22.4 0.6 1 23 693 715 693 715 0.98
14 16 3.4e-05 0.0045 18.4 2.0 1 20 721 740 721 743 0.93
15 16 0.051 6.7 8.4 0.8 1 23 749 771 749 771 0.96
16 16 0.00015 0.02 16.4 0.2 3 23 779 800 777 800 0.97

Sequence Information

Coding Sequence
atgacATCGCTGCTCATAGAATATCCGCCGGAAATTTACGCTGATCCGGAAAAATTCGAAATGCCCGACGATGATTCCTTTGATGCAGTTTGTGGCGAAGTGCTTGTAACAATGAATCGACTACTAGTGTTCCAATGTTCTATTTGTGATGAAAAATATGGACATTTTCCATACTTTCTGTCGCACTTGACGGGACATTACAGACCAAGCGAGGCTGATGCGGATATTAAAGATGACAGTATTGTGCCGGTGGAAGATTTGGCAGAGTATGTATTAGATATTGAGTCTTTGGAAGAGCAACAGCAGCAAGATGCTGAATTGAATGCTTTATTAGAAATGGAAAGCATCGAAGAGGAGGATAACATTAAATTTGAGGATTCCGAAGATATGTTTAGTGAAATAATGGAAATGGATGAAATCACAAATATCACAACAGAAGACGATCCAGAAACTGCAGTGCAGCCAAACTCAAATgATTCCACAAAACCTCAAACAGTTCGAAAATTACGACAATCAGCTAGGCACAATTTTGAACTTACCGAGAGTTCCGAAAGCAGTCTACCAAAAACATTTGAATGTGGCAAATGCGTTAAATTCTTTTCCAGCAGTTCAAGTTTGGACCAACATAATGTAGCGCATCATTCAGAGGAGCGTAAATACAAATGTCCCTACTGTGATGCTGCATTTAAGGAGGATTCCAATTTTCGCGGACACATTAAACGTCACATAGGCGAGAAACGCAACCACTGCGATATGTGTGACAAAAAGTTTATCACACGCGCCGAACTACACAGACACAGACTGACGCACACCGGCGAGAAACCATTCGTTTGTTCATCTTGTGGTCTTCAATTCAAAACGTCCGGTGCACTATCGACGCATATTAAGCGACACAATAATGATCGTGCCCATGAGTGTTCCTTTTGTGCAAAGTCTTTCTTTAGTAAATCACAACTCAAAGATCACATTATTGTGCATACAAAGGAACGTCCACATATATGTTCAGTGTGCAATGCAAGTTTTGCGCGTAGAAAATCGCTTGGTGTACACATGAAACTGCATACAAATGCCAGAGAATATGATTGCAAATTATGCCCGAAAAGTTTTAACCAAAAACCTGCGCTATTGGCACATATGAAAACTAATCATAAAGTGATTAATCAGCTACATGAACAGTTGGACCAGGCACAGGCACTTTATGCAGAAATTGCAAGAGCCAACTTGGTCTACCACGATGGTCAGGTGACCTCCAAGGTGTTGGAAGACAAACAAATGAAGTCCAATCGCACCAGCACGTGCGACTCCTACGATGGACGTTGCGGAGAAGTGTTTGTAACTATGGGACGTCTGTTAGTTTTTCATTGCTCGATATGCGATGAGAAGTATGggcattttccatattttctgGCACATCTAACAGGACATTACAATGACGTTAGTCAGGAACATAAAGCACAGCAGTATGATGATGTGGAGAAGAAGGAAGAGCAGCTGGTGAAAGGTCATGATGAAGTTACTACAAATTCGCAGGAGGTTCATTATCAGGAACTGAATGAATTCGAGCTTAATGCAATTGAATTATTTGAAGTGTATAACAATGAAGAAGTTACAAATCTCAAATTTGGAACTGGAAACGAAGAattatttgtagaatttattGAGAACGAAGACTTGGAAAAACAACTGACGCAGGACACAACAGAATACTGCGAAGATATTGCATCATCAGTGATGGCAGTAGCTGAAcaTCACTCCGAGAATGAGCTTTCACCACCCATGAGTAAACGCACAAAAACTAGCACCACCGACAACACGCAATGGTTTCCCTGCAACAAATGCGAAAAGTATTTCAGCAGCGCCTTCAAAATGCGCAAACATATTGCGGCAGAGCATGCGCTAGAACGCAAATACAAATGTCATCTATGCGGTTTTGCTTTCAAGGAAGAGTTTAATTTACGAGCACACGTCAAACGTCACACGGGTCAAAAACAATTTGGCTGCGATGTTTGTGAGAAAAAGTTTTTTACACGCACCGAAGTAACAACACACATGCGCACACATACCGGCGAGAAGCCCTTCATTTGTTCTTACTGTGGCATAACGTTCAGAACGTCTGGAACGTTGTCCGAGCATATCAAGCGACACAAAAATGTACGACCACACAAGTGTCGTTACTGCGACAAGAGTTTCTTTGATAGCGCACAGCTAAAGGATCATATGCCAGTGCATACCAATGAAAGGCCATTTGTTTGTGCAGTATGTATGGCATGTTTTGCACGTCGCAAATCGTTAATTGTTCACAATAAACTACATGCAAATGCAAAAGAATATGGTTGCAACTTGTGCGAGAAAAGTTTCAATCAGAGACCTGCGCTGCTGGCACATGTTAAAACGAATCATCGTGTGCTGGATGAGAACAACAGAATGCATTCCACCAATGAAGATGAAGATAGTTGA
Protein Sequence
MTSLLIEYPPEIYADPEKFEMPDDDSFDAVCGEVLVTMNRLLVFQCSICDEKYGHFPYFLSHLTGHYRPSEADADIKDDSIVPVEDLAEYVLDIESLEEQQQQDAELNALLEMESIEEEDNIKFEDSEDMFSEIMEMDEITNITTEDDPETAVQPNSNDSTKPQTVRKLRQSARHNFELTESSESSLPKTFECGKCVKFFSSSSSLDQHNVAHHSEERKYKCPYCDAAFKEDSNFRGHIKRHIGEKRNHCDMCDKKFITRAELHRHRLTHTGEKPFVCSSCGLQFKTSGALSTHIKRHNNDRAHECSFCAKSFFSKSQLKDHIIVHTKERPHICSVCNASFARRKSLGVHMKLHTNAREYDCKLCPKSFNQKPALLAHMKTNHKVINQLHEQLDQAQALYAEIARANLVYHDGQVTSKVLEDKQMKSNRTSTCDSYDGRCGEVFVTMGRLLVFHCSICDEKYGHFPYFLAHLTGHYNDVSQEHKAQQYDDVEKKEEQLVKGHDEVTTNSQEVHYQELNEFELNAIELFEVYNNEEVTNLKFGTGNEELFVEFIENEDLEKQLTQDTTEYCEDIASSVMAVAEHHSENELSPPMSKRTKTSTTDNTQWFPCNKCEKYFSSAFKMRKHIAAEHALERKYKCHLCGFAFKEEFNLRAHVKRHTGQKQFGCDVCEKKFFTRTEVTTHMRTHTGEKPFICSYCGITFRTSGTLSEHIKRHKNVRPHKCRYCDKSFFDSAQLKDHMPVHTNERPFVCAVCMACFARRKSLIVHNKLHANAKEYGCNLCEKSFNQRPALLAHVKTNHRVLDENNRMHSTNEDEDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-