Basic Information

Gene Symbol
-
Assembly
GCA_951804985.1
Location
OX638132.1:19746759-19753717[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 27 0.00035 0.047 15.2 0.2 1 23 269 291 269 291 0.96
2 27 2.6e-05 0.0035 18.7 1.4 1 23 298 320 298 320 0.98
3 27 1.2 1.6e+02 4.0 0.2 2 20 357 375 356 378 0.92
4 27 0.015 2 10.0 3.7 1 23 457 480 457 480 0.97
5 27 1.8 2.3e+02 3.5 1.7 1 22 487 508 487 508 0.88
6 27 0.0024 0.32 12.5 1.0 2 23 558 579 557 579 0.97
7 27 0.017 2.2 9.9 1.7 1 23 586 609 586 609 0.96
8 27 0.075 9.9 7.8 0.4 2 20 618 636 617 639 0.93
9 27 0.0096 1.3 10.7 1.1 1 23 720 743 720 743 0.94
10 27 0.068 9 8.0 2.6 1 23 751 774 751 774 0.97
11 27 0.018 2.4 9.8 0.2 2 23 782 804 781 804 0.96
12 27 0.0058 0.77 11.3 2.0 2 21 820 839 819 841 0.93
13 27 2.1e-07 2.8e-05 25.3 1.2 1 23 848 870 848 870 0.99
14 27 0.048 6.4 8.4 5.1 1 23 1013 1036 1013 1036 0.96
15 27 0.0034 0.45 12.1 0.9 1 23 1073 1096 1073 1096 0.98
16 27 0.0002 0.026 16.0 0.9 2 23 1112 1133 1111 1133 0.97
17 27 0.00017 0.022 16.2 5.4 1 23 1140 1162 1140 1162 0.99
18 27 0.03 4 9.1 0.4 2 20 1189 1207 1188 1209 0.93
19 27 7.4e-05 0.0098 17.3 0.3 1 23 1272 1295 1272 1295 0.98
20 27 6.3 8.3e+02 1.8 1.3 2 22 1303 1323 1302 1323 0.92
21 27 0.11 14 7.4 0.5 2 23 1333 1355 1332 1355 0.96
22 27 0.00011 0.014 16.8 2.4 1 23 1379 1402 1379 1402 0.98
23 27 1.3e-05 0.0018 19.6 0.2 1 23 1442 1464 1442 1464 0.96
24 27 0.00027 0.036 15.5 3.1 1 23 1470 1492 1470 1492 0.99
25 27 2.6e-07 3.4e-05 25.0 3.4 1 23 1498 1520 1498 1520 0.98
26 27 2.3e-07 3.1e-05 25.2 2.4 1 23 1526 1548 1526 1548 0.99
27 27 0.0015 0.2 13.1 0.1 1 22 1554 1575 1554 1578 0.90

Sequence Information

Coding Sequence
ATGCAGACACTGTGTCGAACGTGTTACCAGGTCAGCGCGCATCTCCATTCACTTCACGAGAGAACGGAACAGTTTCCACTGAAATCACTGGCCGATCTATTAATGGATATAGCAAAGATCGATACAAAAGCCACCACCAGCGTGGAAGAAATGCCGGAGCAGATGTGTGGTGGTTGCTCACGTAAGTTAAAAAACGCCTATTCGTTTGTACTGCGTGCCCAGGAAGTTAACGACAGATTGCTACAGTACACAAACAGCAGCAGTGGCGATGCAGATGAACCAAAATTGCATTTGGAAAGCAAACACTTGGACTGTCTGCTTGAAGCGCCCATCGATATTCCTACAAATGTGTCAGAATATctacaaattaaattagaaGACGATTGCATTGAGGAGAGTATTTTTGATACATTTTCACTGCCGGACCAGATTGATGATGACAATGAGCTCGAGAATGTGGAACATGACATGGAGAAGTTGAAGAAATTATGCGAAGACTTTGAAGATGAGGACGACGATTCGTTGGCGAATATGAAACGTAAAAGCAGGGGTGCGCGGAAAGGTGATAGCGCAGTTAGTAAACGCAACAAGCAGTTGTCAGGTTTACAGTTGAAGAAAGAAAATACAGATAATGCTGATCCCATAACTGTGTCCGTGCCCAAAAGAAAACTAAGAAGTTGCAAGCACGACACCGACTATGAAAGCGAGCAGAACAGCGAATCCGATGGCGAATGGAATGAGAAACCCAAACGTCGTCGTGGTCGGCCATTAATACACAAGGCCAAGCCAAATGTCAAAGGACGCTACAGCTGCGATGTGTGCGGTAAAACGTTTGCCTGGAAAAAAGATCTAAGTCGTCATGCAGCCAGTCACAATCTTGCAGCGGCAACATTTGAATGTAATGTATGCGCTCGGCAATTTACGCGCAAGGATAAACTGAAGGATCATCAAAAAGTACATCAGCGAAACAGCAACGACGACGGACGGTGTACTGTCTCAGGACGTGCGCGTCATCCAGAGTGGAATTTTGCCGAGCGTCTCTACTCGCAGCagaaatttaagaaaatcgaaTGCAAATTATGCAACATCAACTTGGAGTCGACGCATTTATTGCGTGCGCATCTGCCGATCCACACGAATGCCGACACCTTGCAGCACATGACACTGCAAAGTGTTGTGTCCAAAGAACTCTTCGCACAGGCGCATAATTTGGATGAAATAAAAGCACAAATATCACGTGAAATCGCTGAACAACATTATGCCAAATATTATGCAGTGGTCAATGAGAACGGTTACGAGTTGTGTCTCAGCGACTCTGATGCAGATGCCGATGAAGATGATGGCAATGCGAAAGAAATACAACACAAATACAATTGCGAGTTATGTCAGCAGACATTTGGACGCAAATTTCACGTCTTTGAACATCTAAAGATGAAACACGCTTTTGAGAAGATACCCTACAAATGCAACGTCTGCAAGATGGAGTTCGTTTGCCGCGAAATGTTCGATGTGCACACGCGCACGCAGTGCCGCAACAAGGAGAAGAAATATCAGTGCCTCAAGTGTCCCGGCAAATTCATGTGGGTGGAGAATCTCGATCAGCACAACTGCTCGAATCGCTTCAATAGCGCCGAGTACAAGGCGCAGCTGCCTAAGAAGCGCGAACTGCTGAAGTGCACGGTGTGCGACATGACTTTTGTCTGGCGCAAAGACCTCAAGCGACACAAGGAGACGCACGAACCGGATGGTAGCTCGCACGAGTGCTCCATATGCTATCAGCGTTTTCTAAAGGCGGACAACCTGCGTCAGCATTTGAAGCAGGCGCACGAGCAGTTGCGCCGTCGTCGCATTGAGTGCTGCCTATGCGGCGTAAAGTTTGCACAACTCCAAGAGTTGCGTGATCATTTGCCACAACATGCTGATGGCTACAGCGCTCTAAACAAAGAGCAGGGCAGCTTCTTTAGTAGCTATAGCGAGCAATTGTTGGGTGACGAGCAGGCGGCAGAACTGGCACAGCTGATCAGCAATGATTTTGCGCTGCAAAATACATCTCGATTTTATTCGGCTGTCGACGAGAGCGGCAATGAGCTGGATCTAAACGACTCCGAGTCGGATGAGGACGAAGACAAGCAGGATGTAGTGAACAAGATACCATTGTACAAGTGTGTTATCTGTGAGCAAACATTTACGCGCCGTAAACGTATTTTCTTGCATCAGAATGCTGAACATGCTGAGGTTGTTCCATTGCCCTATGAGTGTGCGCAATGTTCGAAGCAATTCGTTTGCGCCGAACTGCTGCAGCATCATCTCAATCGCGACCATAACAACGCTTACAAACAGTGGCAGTGCAACAAGTGCACGGCGCGCTTTGTGTGGCAACAGAATCTCGAGGCACATCTCAACATCAAACACATTGATCCAGAGCAGCAGATCAGTCGACGGCTGGCCAACAAGCTGCAGTGCGACGAATGTGACAAAACGTTCATATGGCCCAAGGACCTGAATCGACACAAACGCTGTCATCTGCCCGAGGACGAGAAATACGAGTGTCCGTACTGCACGCGTCGTTTCAATCGCAAGGACAATATGCAGGCGCACATGAAAATACATGGAACACAGTTGGGTGTGTCGCTGTCATTGTCGACGAAGCGGGAGCATGTGAAGCATGCCAAAGTAAAAGCGCTCAATGAACATCTCTGCAAGCCGCATGGCTGCAAATTGATACAATGCATGTTGTGCTTTTCGAAGCATTCGAAAATTGCCGATTTACGCACGCATTTACGCACTCACAGCTACGTGGTTTCGTTGGCACCGCATCGACCCGACGATGTAGACGACATTTCGCTTAAATTCTATCCGGACGAGGAGCCGATGCAGGAGGAGCAGCAGCTAATCGCACGTATTATCGACGATATTACGTCGCAACGCTTGGAGCGTTTCTATTCGATCACAAATGAAGTAGGCTATGAACTGAATATCAGCGACTCTGAGACAGACAGTGACTCAGAGGTGGAAGAGGAAACGGTACGTCAGACGTATGAATGTGAACTGTGCTGCGAAACGTTTCGACGCAAGTACAAACTATATGCGCATCAACAGCACGCGCACGAATGGACAGATGTACCACATAGTTGCGAGGTGTGTGATGCGCGTTTTCTTTGCGATGCATTACTGCAGCAGCACTACAAAACGCAGTGCAAAAATGCGCAAAAACGTTTTGTCTGCAAGAAGTGTCCGCTGCGTTTTATGTGGAAGGACAATTTGAAAATGCACGAGCGCACGCTGCATCCAGAACTGGAGGAATCCAAAAAAAAGTTCGAAGCCAATCGCCTTCAATGTACAGAGTGTCAGCGCACTTTTGCCTGGCAAAAGGATTTAACGCGTCACATGATGCAGCATCAGCCAGAGTCTGAGCTCTTCAAGTGCATGTGGTGTCCGCGCAAATTCCATCGCAAGGACAATCTGCATGCGCACATCAAAAAGCATGGTGTGACGCCCAAGTGTTTGGCCACCGCCGAAAGTCATATTAGCGCCAGCAGTGGCCCACATGGCAGAAAGCATATTTACTGCAAAGTCTGCAACATACAATTCTCGAGCATCAACACTTTGCGCACGCATTTACTGCATAACAGTTATGACCAGAGTATGGCAATTGCTCTAAAGCCCGAACCGAATGCGCTGGCACATCATGCATTCCAATCAATGCTAAACTATTCGATAATAAATGAACTGGGTTTCGAGCTGCAACTCGACGATTCGGAGTCGGAGGGCGAGGGACTGCCTGCGCCTAAAGCGGAGGGCATGCCTTTGAAATACACTTGCGAAATATGTCAAATGGAATTCATTCGAAAATACGAAATTGCACAGCATCAACGTACCGTGCATCAGTACGAGCAGATGCCGAAGAAATGTGACAAGTGTCCATTTAAAACCGTCTCGAAGgaTATACTCGACCACCACACGCGTACACAATGTTATAATCTTGAGAAGCAGTTGCAGTGTAGCATCTGCTCGTTTAAGTTTATGTGGCAGGAGAATCTGGACAACCACATACAACGCATGCATCCGCAGGACCAAATACCGAAAAGTGAGGACAAACAAAGTACAAAATCCAGCGAAGCTGCCGGCAAACCCTACCAATGCGACATGTGTCCATGTAAATATAATCGCAAAGATCGCCTCACCGCACACATTAGAAAGGTGCATGTCGATGGTGCTGGCGGTGGCGGCGCCGACGGTGACAAAGCAAATGATGCTTCGCTCATAGATCCCGTAACGGGTGAACAAATGAAAAAACCACCGCCGCCACAACTGGAAAAGAAATATCTATGTGCTTTCTGTGGACGCGCTGTCACCTCGTCCTCGAACCTTATAATACACATGCGTCGACACACTGGCGAAAAGCCTTTCAAGTGTGATTTTTGCGATATGGCTTTTCCACGTTCCTCCGACTTGCAGTGTCATCGTCGAACGCACACGGGTGAGAAGCCGCACAAATGCACCGTTTGCGATAAGGCCTTTTCGCGTTCGTACAAACTGCAGACGCACATGCGCATACACTCGGGCGAACGGCCGTACAAGTGCACCTACTGTGAGAAGAGTTTCACGCAATCGAATGATTTGACGCTGCACATTCGTCGACACACCGGTGAACGACCATATGTCTGTGGTATTTGTGGTGAACGCTTTATTCAGGGTACAGCGCTGAAGAATCATCGCACTATGCGTGGTCACTATGAGGATGTGGAGCCTCGAAAACTCACGGTTTTGGAACGTTTTTAG
Protein Sequence
MQTLCRTCYQVSAHLHSLHERTEQFPLKSLADLLMDIAKIDTKATTSVEEMPEQMCGGCSRKLKNAYSFVLRAQEVNDRLLQYTNSSSGDADEPKLHLESKHLDCLLEAPIDIPTNVSEYLQIKLEDDCIEESIFDTFSLPDQIDDDNELENVEHDMEKLKKLCEDFEDEDDDSLANMKRKSRGARKGDSAVSKRNKQLSGLQLKKENTDNADPITVSVPKRKLRSCKHDTDYESEQNSESDGEWNEKPKRRRGRPLIHKAKPNVKGRYSCDVCGKTFAWKKDLSRHAASHNLAAATFECNVCARQFTRKDKLKDHQKVHQRNSNDDGRCTVSGRARHPEWNFAERLYSQQKFKKIECKLCNINLESTHLLRAHLPIHTNADTLQHMTLQSVVSKELFAQAHNLDEIKAQISREIAEQHYAKYYAVVNENGYELCLSDSDADADEDDGNAKEIQHKYNCELCQQTFGRKFHVFEHLKMKHAFEKIPYKCNVCKMEFVCREMFDVHTRTQCRNKEKKYQCLKCPGKFMWVENLDQHNCSNRFNSAEYKAQLPKKRELLKCTVCDMTFVWRKDLKRHKETHEPDGSSHECSICYQRFLKADNLRQHLKQAHEQLRRRRIECCLCGVKFAQLQELRDHLPQHADGYSALNKEQGSFFSSYSEQLLGDEQAAELAQLISNDFALQNTSRFYSAVDESGNELDLNDSESDEDEDKQDVVNKIPLYKCVICEQTFTRRKRIFLHQNAEHAEVVPLPYECAQCSKQFVCAELLQHHLNRDHNNAYKQWQCNKCTARFVWQQNLEAHLNIKHIDPEQQISRRLANKLQCDECDKTFIWPKDLNRHKRCHLPEDEKYECPYCTRRFNRKDNMQAHMKIHGTQLGVSLSLSTKREHVKHAKVKALNEHLCKPHGCKLIQCMLCFSKHSKIADLRTHLRTHSYVVSLAPHRPDDVDDISLKFYPDEEPMQEEQQLIARIIDDITSQRLERFYSITNEVGYELNISDSETDSDSEVEEETVRQTYECELCCETFRRKYKLYAHQQHAHEWTDVPHSCEVCDARFLCDALLQQHYKTQCKNAQKRFVCKKCPLRFMWKDNLKMHERTLHPELEESKKKFEANRLQCTECQRTFAWQKDLTRHMMQHQPESELFKCMWCPRKFHRKDNLHAHIKKHGVTPKCLATAESHISASSGPHGRKHIYCKVCNIQFSSINTLRTHLLHNSYDQSMAIALKPEPNALAHHAFQSMLNYSIINELGFELQLDDSESEGEGLPAPKAEGMPLKYTCEICQMEFIRKYEIAQHQRTVHQYEQMPKKCDKCPFKTVSKDILDHHTRTQCYNLEKQLQCSICSFKFMWQENLDNHIQRMHPQDQIPKSEDKQSTKSSEAAGKPYQCDMCPCKYNRKDRLTAHIRKVHVDGAGGGGADGDKANDASLIDPVTGEQMKKPPPPQLEKKYLCAFCGRAVTSSSNLIIHMRRHTGEKPFKCDFCDMAFPRSSDLQCHRRTHTGEKPHKCTVCDKAFSRSYKLQTHMRIHSGERPYKCTYCEKSFTQSNDLTLHIRRHTGERPYVCGICGERFIQGTALKNHRTMRGHYEDVEPRKLTVLERF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-