Basic Information

Insect: Dryococelus australis
Gene Symbol: ham
Assembly: GCA_029891345.1
Location: CM056994.1:300751251-300769939[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.022 20 9.4 0.3 1 23 84 107 84 107 0.92

2 8 4e-09 3.5e-06 30.6 2.2 1 23 113 135 113 136 0.96

3 8 9.1e-07 0.00079 23.2 1.7 1 23 142 164 142 164 0.95

4 8 2.3e-05 0.02 18.8 5.0 1 23 170 192 170 192 0.99

5 8 0.00089 0.78 13.8 1.1 2 21 200 219 199 220 0.95

6 8 1.1e-09 9.6e-07 32.4 1.1 1 23 538 560 538 560 0.99

7 8 2.8e-07 0.00024 24.8 1.7 1 23 566 589 566 589 0.97

8 8 1.6e-05 0.014 19.3 4.3 1 23 595 617 595 617 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.022	20	9.4	0.3	1	23	84	107	84	107	0.92
2	8	4e-09	3.5e-06	30.6	2.2	1	23	113	135	113	136	0.96
3	8	9.1e-07	0.00079	23.2	1.7	1	23	142	164	142	164	0.95
4	8	2.3e-05	0.02	18.8	5.0	1	23	170	192	170	192	0.99
5	8	0.00089	0.78	13.8	1.1	2	21	200	219	199	220	0.95
6	8	1.1e-09	9.6e-07	32.4	1.1	1	23	538	560	538	560	0.99
7	8	2.8e-07	0.00024	24.8	1.7	1	23	566	589	566	589	0.97
8	8	1.6e-05	0.014	19.3	4.3	1	23	595	617	595	617	0.98

Sequence Information

Coding Sequence: ATGCCGAGAGGCGTTCGTCCACTTCTTCGCGTTGCACACACCTGGGTATTCTCACACTGGATGACTTACCACCTTAACCTCCCCTTTGGCTTCTCACCCGTCACCTACCCAATCCCTCCCGCCTCTTTTCCCATTTGCAGTCTTCGTGTGCTACATTACCGACTACAAAACTTGAGCTCGACAGTCGTCACCTCTAGTCCCACGTTGGACGAGCACCAGGTGAGCTGCCACAGGTATCCGGCGGAGCAGTACCGCTGCGATCAGTGCCCCCGCGCCTACAGCTGGCGGCCCAGCCTCTTCAGGCACAAGGCGCTGCTGCACGGCGACGTCAGGAAGTACTCCTGCGAGAACTGCACCAAGGTGTTCACGGACCCCAGCAACCTCCAGAGGCACATCCGCACGCACCACGTGGGCGCTAGGTCGCACGCCTGCCCCGAGTGCGGCAAGACGTTCGCCACGTCGTCCGGCCTCAAGCAGCACACGCACATCCACTCCACCGTGAAGCCGTTCCAGTGCGAGGTGTGCTTCAAGGCCTACACGCAGTTCTCGAACCTGTGCCGGCACAAGCGCATGCATGCAGACTGCCGCATGCAGATCAAGTGCGGCAAATGCAACCAGTCCTTCAGCACCGTCACCTCGCTGTCGAAGCACAAGAGGTTCTGCGACTCGAGCCCCCAGCAGCCGGCGTCATGCTCCGCGCCGCCGAGGAGGGACGCaccaccgccgccgccgccggCCAACCCCTACTACGTCTACCCCCCTCGCTACCCTCTCTACCCCCCACCCCTTTTGCCACACTATCCCTCGCTCTTCCACCACCCTCAGGCCGCGCCCTCCGCCTTCCTACCCAACCCGCTGCTCTTTGCGCCCCCCAAGATGTTCGACGGCGCCGGCTGCCACGCGCTGCAGAGGCCAGCGGTTGCCGCAGAGGCTAAGTCGCCGGCGGAGCACCTCATGAACGGCTTCCAGAGGTCATCGACGCCGCCGCGCAAGGTGTCGCCGCCGTCCGCCGACGAGGCCGTGTCCAGCCTGAGGCCGTCGCCCGCCCGGCCGCTGAACCCGCGTGGAGGCGGCGCCGTGTACGCCGACCCGCGGGACGACATGCGCAATTGCTCGCCCACGGACCTGACGGTGTCGCACAGCTCCCGGCCGGACCAGCCGCTGGACCTCCGTGTCTGCAGATCCCCGCAGCCGGAGGAGGACGCCAGGAGCATGTCTCCGGAGAAGCCTGTCCCCAGGAGTGTGACCCCGGAGGTGGCCACCCCGCCCTGCCAGTACCCCGAGAAGGTGCCCACCTCACTGGGCGCCACCATGGCCTACCCACGACCGGTGCACCCTATACCCATGTTCGTGGACATGTACCGCCCCCACTACAACAACTTCCCGCCGCCCCCACCCCCACCGCCTCAGGGGGGCGACAGGCTCCTGCCGCCGCCGGCGTTCGCGTCAGCCAGGGGCTTCCCCTTCCCTGTGAACCCCTTCAACGGACACCTCGGTGGCCGCCTGCCGTTCGGTGCGGGAATACCGGGGCTGGGCGGCGGCAAGCCCTACGAGGACGTGGTGGGGCAGCCGGCGCCCCCAGGTGGCGGAGGCGGCAAGCTGAAGGACAGGTACAGCTGCAAGTACTGCGGCAAGGTGTTCCCGCGTTCCGCCAACCTGACTCGCCATCTGCGCACCCACACGGGGGAGCAACCATACAAGTGCAAGTATTGCGAGCGCTCCTTCAGCATCTCGTCGAACCTGCAGAGGCACGTGCGCAACATCCACAACAAGGAGAAGCCATTCCGCTGCTCGCTGTGCGACCGCTGCTTCGGCCAGCAGACGAACCTCGACCGGCACCTGAAGAAGCACGAGGCGGGCGGCGCCCCCGCCCCCGACAGCCCCGCCTCCAGCAACGAGAACGACAAGGAGGAGTCGTACTTCGACGAGGTGCGCCGCTTCTTCGGGAAGGTGGTGCCGCGCGGGGGCGGCGACTCGGAGGGCGCGGTTTCGGAGGACGAGGGTGGCTCGCGAATCGGAGCCGCGCCCTCGCCAGTGGCGTACGAGGTGCAGGTGAAGGCGGAGAACACACTGCGTGGCGAGGCCGCCGGCTTCCGGCTGCACGACGCCATAGAGATCGCCACGTAG
Protein Sequence: MPRGVRPLLRVAHTWVFSHWMTYHLNLPFGFSPVTYPIPPASFPICSLRVLHYRLQNLSSTVVTSSPTLDEHQVSCHRYPAEQYRCDQCPRAYSWRPSLFRHKALLHGDVRKYSCENCTKVFTDPSNLQRHIRTHHVGARSHACPECGKTFATSSGLKQHTHIHSTVKPFQCEVCFKAYTQFSNLCRHKRMHADCRMQIKCGKCNQSFSTVTSLSKHKRFCDSSPQQPASCSAPPRRDAPPPPPPANPYYVYPPRYPLYPPPLLPHYPSLFHHPQAAPSAFLPNPLLFAPPKMFDGAGCHALQRPAVAAEAKSPAEHLMNGFQRSSTPPRKVSPPSADEAVSSLRPSPARPLNPRGGGAVYADPRDDMRNCSPTDLTVSHSSRPDQPLDLRVCRSPQPEEDARSMSPEKPVPRSVTPEVATPPCQYPEKVPTSLGATMAYPRPVHPIPMFVDMYRPHYNNFPPPPPPPPQGGDRLLPPPAFASARGFPFPVNPFNGHLGGRLPFGAGIPGLGGGKPYEDVVGQPAPPGGGGGKLKDRYSCKYCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKEKPFRCSLCDRCFGQQTNLDRHLKKHEAGGAPAPDSPASSNENDKEESYFDEVRRFFGKVVPRGGGDSEGAVSEDEGGSRIGAAPSPVAYEVQVKAENTLRGEAAGFRLHDAIEIAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -