Daus050278.1
Basic Information
- Insect
- Dryococelus australis
- Gene Symbol
- -
- Assembly
- GCA_029891345.1
- Location
- CM056994.1:351711226-351728594[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.5e-06 0.0039 21.0 3.9 1 23 13 35 13 35 0.98 2 12 0.0064 5.6 11.1 1.9 1 19 69 87 69 92 0.94 3 12 8.8e-05 0.077 16.9 4.2 1 23 97 119 97 119 0.98 4 12 9.6e-05 0.084 16.8 3.3 1 23 129 151 129 151 0.98 5 12 3.8e-07 0.00033 24.4 0.5 1 23 157 179 157 179 0.99 6 12 1.7e-07 0.00015 25.5 0.2 2 23 186 207 186 207 0.97 7 12 1.4e-06 0.0012 22.6 4.4 1 23 213 235 213 235 0.98 8 12 7.6e-06 0.0066 20.3 2.5 2 23 255 276 254 276 0.98 9 12 0.00019 0.16 15.9 1.8 1 23 282 304 282 304 0.95 10 12 6.7e-07 0.00059 23.6 2.7 2 23 311 332 311 332 0.97 11 12 1e-06 0.00089 23.0 1.1 1 23 338 360 338 360 0.98 12 12 1.9 1.7e+03 3.3 1.8 1 23 366 388 366 388 0.91
Sequence Information
- Coding Sequence
- ATGCGTCATTATACGAGGCACACAGATGTTCGTCCTCACTCTTGTGACATCTGTGACATGAGGTTCAAGCAGTTGTTTGAGTTGAAGAAACATCAGAAGACCCACACTGGAGTTAAAAAGTTCATGTGCAGGAGTTGTAGTTTCTCAGCTTATTACCAGTGTGTCCTGAGAGAGCACGAGAAGAAGCACACGGCAGAGTTCCGGTTCCACTGCGAGGAGTGCAGCAAGGGCTTTCACACACGTCCGCAGTTGGAGGCTCACGACATTTCCTTTCATGGTGCACAGCCCTTCTGTTGCACCACGTGTGGTAAAACATATTCCGTAAAACAGCGATTGAAAGTTCATCTGCAAACGCATACTCCATCGTACGTACCTGAACGAAAACATCAGTGTGAAGCATGCGGAAAGACCTTTCATCGTGGGCGAGATCTTTCGCGGCACATGATTCGCCACACAGGTGCCAAAGAGTACGTGTGCGATGAATGTGGAAAGTGTCTGGCCAGCAAGTATGCTCTTAAAGACCACATACGGATCCACACCGGAGAGCGACCGGCCGTGTGCGATGTTTGTGGGAAGGCGTTTACGCGGTATGACTATTTAAAAGTTCATTTGCGTTCGCACACTGGTGAGCGGCCATACACTTGTCAGACTTGCAACAAGTCTTTCACTCAGCATTCCTCTCTTGTGATCCATCAGCGCTACCATACAGTGGCTCACAAGAAGGCAAATCATCCTGATGCCCAAAACCCCTCTAGGATTAACCAGTGCAACACTTGTGGCAAAGTGTTTGCACACAAAAAGTCCTTGTCGCTTCACGTGAAGTCGCACACCGGCGAGAACGTTTTCTTGTGCGACATCTGTGGCAAAGCACTGACCAACAAGGAGCATCTGAAATTCCATCGGCGCATCCACACCGGGGAAAAGCCTAATGTGTGCGACGTGTGTGGCAAAGCGTTCAGCAAGCGCTGCAACCTGAAACTGCACCAGCGCACCCACACGGGAGAGCGTCCTTACACGTGTGATGCGTGTGGCAAGTCGTTCACACAGCGCTCCACTCTAGTCATCCACAAGCGATACCACACGGGGCAGAGACCTTACGAATGTATTCGGTGCCTTAAAGGATTTGTGTGTAGGGCACTTTTAAACACACACCAGAAAAACCACTGTGTGTGA
- Protein Sequence
- MRHYTRHTDVRPHSCDICDMRFKQLFELKKHQKTHTGVKKFMCRSCSFSAYYQCVLREHEKKHTAEFRFHCEECSKGFHTRPQLEAHDISFHGAQPFCCTTCGKTYSVKQRLKVHLQTHTPSYVPERKHQCEACGKTFHRGRDLSRHMIRHTGAKEYVCDECGKCLASKYALKDHIRIHTGERPAVCDVCGKAFTRYDYLKVHLRSHTGERPYTCQTCNKSFTQHSSLVIHQRYHTVAHKKANHPDAQNPSRINQCNTCGKVFAHKKSLSLHVKSHTGENVFLCDICGKALTNKEHLKFHRRIHTGEKPNVCDVCGKAFSKRCNLKLHQRTHTGERPYTCDACGKSFTQRSTLVIHKRYHTGQRPYECIRCLKGFVCRALLNTHQKNHCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -