Daus103499.1
Basic Information
- Insect
- Dryococelus australis
- Gene Symbol
- -
- Assembly
- GCA_029891345.1
- Location
- CM056997.1:146096049-146100455[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.00041 0.36 14.8 0.2 1 23 137 159 137 159 0.98 2 24 1.3e-05 0.011 19.6 2.0 2 23 165 186 165 186 0.97 3 24 0.0014 1.2 13.2 0.6 1 22 192 213 192 213 0.95 4 24 0.0064 5.6 11.1 0.2 2 23 240 261 239 261 0.95 5 24 0.00018 0.16 15.9 1.8 1 23 264 286 264 286 0.98 6 24 0.0012 1.1 13.3 0.8 2 23 316 337 315 337 0.96 7 24 0.003 2.6 12.1 2.5 1 23 343 366 343 366 0.98 8 24 9e-07 0.00079 23.2 0.7 1 23 412 435 412 435 0.96 9 24 8.1e-08 7.1e-05 26.5 3.9 1 23 441 463 441 463 0.99 10 24 0.0056 4.9 11.3 0.1 1 23 498 520 498 520 0.98 11 24 0.0032 2.8 12.0 2.5 1 23 544 566 544 566 0.98 12 24 0.00039 0.34 14.9 2.4 1 23 572 595 572 595 0.98 13 24 3.8e-05 0.034 18.1 1.9 1 23 612 634 612 634 0.95 14 24 0.048 42 8.3 0.4 6 23 677 694 672 694 0.86 15 24 0.0027 2.4 12.3 0.3 3 21 758 776 757 777 0.94 16 24 1.2e-05 0.011 19.6 0.6 1 23 896 918 896 918 0.98 17 24 0.0018 1.6 12.8 4.3 1 23 953 975 953 975 0.98 18 24 0.0025 2.2 12.4 3.4 1 23 1010 1032 1010 1032 0.98 19 24 0.041 35 8.6 4.6 1 23 1066 1088 1066 1088 0.98 20 24 0.0097 8.5 10.5 5.6 1 23 1136 1158 1136 1158 0.98 21 24 0.00016 0.14 16.1 4.8 1 21 1183 1203 1183 1205 0.95 22 24 7.6e-05 0.067 17.1 0.5 1 23 1211 1234 1211 1234 0.97 23 24 0.00062 0.54 14.3 0.7 1 23 1239 1262 1239 1262 0.98 24 24 0.00029 0.25 15.3 0.1 1 23 1288 1311 1288 1311 0.97
Sequence Information
- Coding Sequence
- atgTTGGATGTGAAGCAGGAAGAAATAGAGGTGAGTGAGGACAATCCTGTAGAAGCTCATGATGGTTTGGTTACTGCAGACCCTCTGGATGTTCCGGCAGGTAGGAACCGCAAAAGTCCTGTGCAAGAGGATCATCATTTCTACAATTCAGCTATTCTCTTGGATGACAATGGCAGTGCATTTGAGTGTGAGAATGAAGGAGAAATAGACTTTATGAGGGTAAACCATGGCGGGGCAATATCTGTGCAGGGTCTGTTCGACTCCAGCGAGTCTGCAGCCGTGGTGAGTAAACCCATCCAGCCAAAGAAGAAGCGCAGGATCTTCAagagaatcacattcaagaagaaaaagaaaaagtcaCCACCTATATGGACCCCACAAGAAGTCCGGATGGAGACTCACCATGGCTACGTGTGTAGGAAGTGTGGGGAGAGCTTTCCCGAGCTGTGGCTGTTGAAGAGTCACGAGAAGTCACACGGCAGTGCCGAGAATGTATGTACAATCTGTGAGAAACGGTTCTCCAGCAAGGGCTGCCTGGTGCGACATATCCGTCTCCACACCCGCCAAATGCCGTATTCGTGTGCCAAGTGTTCCACTTCCTTTGCAAACAAGTCTGCTTACTTGCAGCATCGCCAGACCAGCTGCTCAATTGAGGAACCACCGCCACTACCCCCAGAGGCAGCCCAAACATCTCCAGACAAGCAAGAAAACAAGTTGTCGTGCTACATTTGCCAGGAGATGTTTCCGTCAGTTAATCAGCTGATTCAGCATCGGAAGGGCCATGTAAACTATTCGTGTCCAAAATGCAAGAAACACTTCACCGGAGGGAAAGCCCTCAGCAACCATTTACGTGTTCACAAGCTTGGAGCGATAATGGCCCACAAAATGGTTCATGCAAAAGCTCCCCCAGCAGTCTTGCCTGTGCCTGCCATCCAAAAAACCTCAAGTTGTAGCGTATGTAACAAAGTTTTCCCCAGTGTTGGTTTGATGCATCGTCACATGGTAAAGCACACCAAATTGAAGCAGTTCACATGCAACATATGTCATACATCGATGGGGTATGCTACTTCACTCCGCAAACACATGAAGAGTatgcacaatataaacattgaTCACAGCAGCATCAAACCTGATAACATTCCCTCAAATGATGTGCCAAGCCAACAGGATCCCCCTCCCCTTGTGATTAAGTCAGAGGCTTTGGAAGTCCCAGCAGAAACTGCGGACGGACAACATGTTTGCAATATCTGCAACAAGGTGTTCAGCCAAAAGTCACTTTTGGTGAACCATGTGAAAGTAATTCATATGGGGATGAAAGCATACAAGTGCACAACATGTGGCAAGATGTTTACCTCAAAGCCACATTTGGTGAGACACATGAAGACGCATAAGGAGAGTCAATTTGCTCTGACTTGCAAGATATGCTGCAAGAAGTTCCTAGATGTAAAGACCTACAACAAACACAAGGGAGTCCACACTCGCTACCGTTGCTACACCTGCGGTATCTGTTCTGAGTCCTTCAATGGCATAAACTCGTGGCGTGCCCACCAGGTCACACATCTCCCTGATATTGGACATGCACCCATGATGAACATTGCCAAGCAGGAGATTCAGACTTCCACTGGGAAATACACCTGCCGACTCTGTTTCAAAATGTACAGATCGCGGGCGGAACTCTATGAGCACAAGAAGATGCACATCaaacttaagatctactcgtgtacAGAGTGCAAGAATTCTTACAATAGTCTCTCCACCCTTATGAAGCACAAACGCAGAGAGCACTCGAGCGATGAACAGTACTTTGATATGGGTCTGATGTCTGATTCCACCCATGACTGTGATTTCTGTGGGAAATCGTTTGGCAGCTCATCGTCACTCAGTAAGCACAAGCTGGTCCATGCCGAgctactgtatgcgaatgtgacaCGCATGGATCCACCGGTCCGCCGTAGGGTGCTCAAGACATCAGAGACTGTTGATTCTGCCTCTCCAGTGCTGCCCAGCGATCCTTTCCTCTGCGTCCCTTGCAATCGGTCTTTTACGGACCTAATGTCACTGAAGACGCACCGGGGCTGGCACAAGAGGAAACACAACAGTCCTTTCAGCATGCTCCAACTAAAGGCTTTTAGCACACAGTCACCACCCAAAGCTCCAGTCAGCCCACCCAAGGCTCCAGTCAGCCCACCCAAGGTTCCAGTCGGCACACCTATCAAGGAGGTTTTCAACTCTCCAAGCAGTGCAAAGGCATTCCCTGATGACAGTTTCTGGTGCGTAGAATGCAACAAGGGGTTCAAGAAGAGTGTGAATCTGGCACGGCACTTCAAACTGAGTCAGAGGCATAACATGAAAGTACAGGGTCAGGCAGAAAGTATCAATGTCTCGCCAACCAAAGATGGTTCCGACATTGTGCCTGTAGAAGTGCAGCTTTTGGTGCAAGAAGAGACTGACAATGATGCTTCAGAAGTACTTGCAAATGACTCTGCTGCTGATAGTGCATCTGCTGATTCAGTTTCAGATGATGCACCAGCTGTTGCAAGTAACTCTGCTTCAGATGGCACATCTGCAGATGATTCAGTCTTAAGTGAAGAACCTACCAAAGATTCATCTACAGCCCTGATGATAGAAAATGCAACAACAGATTTATCTTCACCCACAGTAACGCAACCAATTCCAACTCCACCTTATACCTGCTTGACGTGTGGTATGCCATTCAGCAGTGCGTCTTCTCTGAGCAAGCACAAGCGGCTTCACCTGTCGCCAACACCTACGGCCCCGGTGAGCAGGTGTCTGAGGCCCAAGGAGTCCGTTCGCCCACCTGATCGTATGCTACCCGAGCTGGAGGTGCAGGGTGCCTTCAGGTGCAGCACTTGCAAGAAGTACTACAGCTCGGTAAAGTCGCTGTATAAACACCAGAGGCTGCATGCACGCAAGCCTCTTACCGCGTTTGCCAAACAGTTGCCTGGTGCTCATGCACAGTTGGCCGTTCCCGTGCGAGATCTGTCCAAGCGACTCATCCCAACCAAGTTCCACTGCAACATGTGCGGTCTGTACTACAGTAGTGCCGTGACATTGTACAAGCATAAGCGTCGCCACGAAAGGTATTTAAATGCTACGCGGGCCGAGGAGGCCGCCACCCCACCGGTGCAGATTCCGGCAATACCGGCACTGCCGGAGCGCAAGGTCCGCAGAAAATATCGCTGCGAAATTTGCCTGCAGTTTTACAGCTGTAGTTCAAATTTGTACAGGCACAGGCGCCTGCATTTGGACCAGCAACAAGTGCTGCCTGTTGCCGACTTTCCCGGGGAAGTTGCTACCGTGTTTCCTTCGCAAGATGCTGGCACACCGCCTCCTTGCGAGCAGCCACCTGTGCAGTGTGTGGCCCGACAGCAGGTGCAGACTCCGTATCAGTGCGACGTGTGCAAGAAGTTCTATAGTTGCTCCACTTCCCTGAACAAACACAGGCGTTTGCATGCTGTGAGGCCCTTGCCGTTACCAGCAAAAAATTTAGTGGGAGACCCTCCAGTAGATGAGGCAAGCACTAACTTCTCATGCCCGTACTgctcaaagacattttcaaaacagttcaACTTGAACATGCATGTGCGTTGCCACACAGGCGAGCGCCCATATGTCTGTGACCTCTGCCCGCAGGCATTTACTCGTTACAACGCCCTGTGGAAGCACAAAAAACGTATGCATCTGAACTGGACTTATACTTGCACCACCTGTGGGCGGTTGTTTCCTTTCAAGAATGTGCTCAACATGCACATACGCAAGGTTCACCAGTTTGAGCCCAAGAAGGCCTTCCGCCTCGGTGGCATGGGTGCCAAGAAGTTGAAGGTGTCTGGGATGGGGAACTTCCCGTGTGGCGAGTGCAGCAAGAGTTTTGTGTATCTGGGAGCATTGCTGACCCACGAGAGAATGTACCACGGCAAGTGA
- Protein Sequence
- MLDVKQEEIEVSEDNPVEAHDGLVTADPLDVPAGRNRKSPVQEDHHFYNSAILLDDNGSAFECENEGEIDFMRVNHGGAISVQGLFDSSESAAVVSKPIQPKKKRRIFKRITFKKKKKKSPPIWTPQEVRMETHHGYVCRKCGESFPELWLLKSHEKSHGSAENVCTICEKRFSSKGCLVRHIRLHTRQMPYSCAKCSTSFANKSAYLQHRQTSCSIEEPPPLPPEAAQTSPDKQENKLSCYICQEMFPSVNQLIQHRKGHVNYSCPKCKKHFTGGKALSNHLRVHKLGAIMAHKMVHAKAPPAVLPVPAIQKTSSCSVCNKVFPSVGLMHRHMVKHTKLKQFTCNICHTSMGYATSLRKHMKSMHNINIDHSSIKPDNIPSNDVPSQQDPPPLVIKSEALEVPAETADGQHVCNICNKVFSQKSLLVNHVKVIHMGMKAYKCTTCGKMFTSKPHLVRHMKTHKESQFALTCKICCKKFLDVKTYNKHKGVHTRYRCYTCGICSESFNGINSWRAHQVTHLPDIGHAPMMNIAKQEIQTSTGKYTCRLCFKMYRSRAELYEHKKMHIKLKIYSCTECKNSYNSLSTLMKHKRREHSSDEQYFDMGLMSDSTHDCDFCGKSFGSSSSLSKHKLVHAELLYANVTRMDPPVRRRVLKTSETVDSASPVLPSDPFLCVPCNRSFTDLMSLKTHRGWHKRKHNSPFSMLQLKAFSTQSPPKAPVSPPKAPVSPPKVPVGTPIKEVFNSPSSAKAFPDDSFWCVECNKGFKKSVNLARHFKLSQRHNMKVQGQAESINVSPTKDGSDIVPVEVQLLVQEETDNDASEVLANDSAADSASADSVSDDAPAVASNSASDGTSADDSVLSEEPTKDSSTALMIENATTDLSSPTVTQPIPTPPYTCLTCGMPFSSASSLSKHKRLHLSPTPTAPVSRCLRPKESVRPPDRMLPELEVQGAFRCSTCKKYYSSVKSLYKHQRLHARKPLTAFAKQLPGAHAQLAVPVRDLSKRLIPTKFHCNMCGLYYSSAVTLYKHKRRHERYLNATRAEEAATPPVQIPAIPALPERKVRRKYRCEICLQFYSCSSNLYRHRRLHLDQQQVLPVADFPGEVATVFPSQDAGTPPPCEQPPVQCVARQQVQTPYQCDVCKKFYSCSTSLNKHRRLHAVRPLPLPAKNLVGDPPVDEASTNFSCPYCSKTFSKQFNLNMHVRCHTGERPYVCDLCPQAFTRYNALWKHKKRMHLNWTYTCTTCGRLFPFKNVLNMHIRKVHQFEPKKAFRLGGMGAKKLKVSGMGNFPCGECSKSFVYLGALLTHERMYHGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -