Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 0.038 1.6e+02 5.6 0.0 3 17 13 27 11 30 0.87

2 21 0.055 2.4e+02 5.1 0.0 4 17 27 40 26 43 0.87

3 21 0.14 6e+02 3.8 0.0 3 16 39 52 37 54 0.85

4 21 0.018 78 6.6 0.0 3 17 52 66 50 69 0.89

5 21 0.12 5.3e+02 3.9 0.0 3 16 65 78 63 82 0.85

6 21 0.066 2.8e+02 4.8 0.0 3 16 78 91 76 93 0.86

7 21 0.018 78 6.6 0.0 3 17 91 105 89 108 0.89

8 21 0.049 2.1e+02 5.2 0.0 4 17 105 118 104 121 0.87

9 21 0.055 2.4e+02 5.1 0.0 4 17 118 131 117 134 0.87

10 21 0.038 1.6e+02 5.6 0.0 3 17 130 144 128 147 0.87

11 21 0.038 1.6e+02 5.6 0.0 3 17 143 157 141 160 0.87

12 21 0.055 2.4e+02 5.1 0.0 4 17 157 170 156 173 0.87

13 21 0.14 6e+02 3.8 0.0 3 16 169 182 167 184 0.85

14 21 0.024 1e+02 6.2 0.0 3 17 182 196 180 197 0.90

15 21 0.055 2.4e+02 5.1 0.0 4 17 196 209 195 212 0.87

16 21 0.12 5.3e+02 3.9 0.0 3 16 208 221 206 225 0.85

17 21 0.066 2.8e+02 4.8 0.0 3 16 221 234 219 236 0.86

18 21 0.018 78 6.6 0.0 3 17 234 248 232 251 0.89

19 21 0.055 2.4e+02 5.1 0.0 4 17 248 261 247 264 0.87

20 21 0.038 1.6e+02 5.6 0.0 3 17 260 274 258 277 0.87

21 21 0.037 1.6e+02 5.6 0.0 3 17 273 287 271 291 0.87

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	0.038	1.6e+02	5.6	3	17	13	27	11	30	0.87
2	21	0.055	2.4e+02	5.1	4	17	27	40	26	43	0.87
3	21	0.14	6e+02	3.8	3	16	39	52	37	54	0.85
4	21	0.018	78	6.6	3	17	52	66	50	69	0.89
5	21	0.12	5.3e+02	3.9	3	16	65	78	63	82	0.85
6	21	0.066	2.8e+02	4.8	3	16	78	91	76	93	0.86
7	21	0.018	78	6.6	3	17	91	105	89	108	0.89
8	21	0.049	2.1e+02	5.2	4	17	105	118	104	121	0.87
9	21	0.055	2.4e+02	5.1	4	17	118	131	117	134	0.87
10	21	0.038	1.6e+02	5.6	3	17	130	144	128	147	0.87
11	21	0.038	1.6e+02	5.6	3	17	143	157	141	160	0.87
12	21	0.055	2.4e+02	5.1	4	17	157	170	156	173	0.87
13	21	0.14	6e+02	3.8	3	16	169	182	167	184	0.85
14	21	0.024	1e+02	6.2	3	17	182	196	180	197	0.90
15	21	0.055	2.4e+02	5.1	4	17	196	209	195	212	0.87
16	21	0.12	5.3e+02	3.9	3	16	208	221	206	225	0.85
17	21	0.066	2.8e+02	4.8	3	16	221	234	219	236	0.86
18	21	0.018	78	6.6	3	17	234	248	232	251	0.89
19	21	0.055	2.4e+02	5.1	4	17	248	261	247	264	0.87
20	21	0.038	1.6e+02	5.6	3	17	260	274	258	277	0.87
21	21	0.037	1.6e+02	5.6	3	17	273	287	271	291	0.87

Coding Sequence: ATGATGCTTCGTGTTGTTCGCAGTGTGAGAACAGGTGAAATGATGCTTCGTGCTGTTCGCAGTGTGAGAACAGGTGAGATGATGCTTCGTGCTGTTCGCAGTGTGAGAACAGGTGAAATGATGCTTCGTGCTGTTCGCAGTGTGAGAACAGGTGAAATTATGCTTCGTGCTGTTCGCAGTGTGAGAACAGGTGAGATGATGCTTCGTGCTGTTCGCAGTGTGAGAACAGGTGAAATTATGCTTCGTGCTGTTCGCAGTGTGAGAACAGGTGAAATTATGCTTCGTGCTGTTCGCAGTGTGAGAACAGGTGAAATGATGCTTCGTGCTGTTCGCAGTGTGAGAAAAGGTGAGATGATGCTTCGTGCTGTTCGCAGTGTGAGAACAGGTGAGATGATGCTTCGTGCTGTTCGCAGTGTGAGAACAGGTGAAATGATGCTTCGTGCTGTTCGCAGTGTGAGAACAGGTGAGATGATGCTTCGTGCTGTTCGCAGTGTGAGAACAGGTGAAATGATGCTTCGTGCTGTTCGCAGTGTGAGAACAGGTGAAATTATGCTTCGTGCTGTTCGCAGTGTGAGAACAGGTGAGATGATGCTTCGTGCTGTTCGCAGTGTGAGAACAGGTGAAATGATGCTTCGTGCTGTTCGCAGTGTGAGAACAGGTGAAATTATGCTTCGTGCTGTTCGCAGTGTGAGAACAGGTGAAATTATGCTTCGTGCTGTTCGCAGTGTGAGAACAGGTGAGATGATGCTTCGTGCTGTTCGCAGTGTGAGAACAGGTGAAATGATGCTTCGTGCTGTTCGCAGTGTGAGAACAGGTGAGATGATGCTTCGTGCTGTTCGCAGTGTGAGAACAGGTGAGATGATGCTTCGTGCTGTTCGCAGTGTGAAAAACAGGTGA
Protein Sequence: MMLRVVRSVRTGEMMLRAVRSVRTGEMMLRAVRSVRTGEMMLRAVRSVRTGEIMLRAVRSVRTGEMMLRAVRSVRTGEIMLRAVRSVRTGEIMLRAVRSVRTGEMMLRAVRSVRKGEMMLRAVRSVRTGEMMLRAVRSVRTGEMMLRAVRSVRTGEMMLRAVRSVRTGEMMLRAVRSVRTGEIMLRAVRSVRTGEMMLRAVRSVRTGEMMLRAVRSVRTGEIMLRAVRSVRTGEIMLRAVRSVRTGEMMLRAVRSVRTGEMMLRAVRSVRTGEMMLRAVRSVRTGEMMLRAVRSVKNR

Sequence clustering based on sequence similarity using MMseqs2