Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 0.047 2e+02 5.3 0.0 27 39 69 81 68 85 0.89

2 3 8.6e-18 3.7e-14 55.7 0.0 1 44 98 142 98 143 0.96

3 3 4.8e-12 2.1e-08 37.3 0.0 1 38 151 188 151 191 0.92

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	0.047	2e+02	5.3	27	39	69	81	68	85	0.89
2	3	8.6e-18	3.7e-14	55.7	1	44	98	142	98	143	0.96
3	3	4.8e-12	2.1e-08	37.3	1	38	151	188	151	191	0.92

Coding Sequence: ATGCATTTTCGGTACATCGAGAGTCCACTATATCCACCAGAGGTAGCGGGTGATTGTGATCCTTTGTTCTTGAACCCCATGTTGAATGCAGGTGCTGTGACCTTCACAAGGGTTGGCAGTGTCGACTTCCACATCGCTTATGTCTGGGTAGATTCTAACCCTCACATGTCGCTGCCATTTCATGATTGTCAACCGGGCCTCAGCGGCATCCCGAGCAGCACACTGTACAAGATAGCACGTCGAGAGGGAATACGCCTGTCGGCACCCTTCAATGCAGCCCCTACAGCATGGACCCCGGATGACCTTGAGCGTGCGCTGGAGGCCATCCGCAAGGGCGAGATCTCTGTACAGCGAGCCTCCACGGAGTTTGGCATCCCTACAGGCACGCTGTATGGGCGCTGTAAGAGGGTAGGCATCGACTTGTCAACACGTGGCAATGTCACAGCATGGACAGAGGACTGCATGGGAAAAGCAATGGAGGCGGTACGCGTCGGTGGGATGAGCATTAATATGGCATCCCAGCAGTACAGCGTGCCGTACTCGTCACTGTACGGGCGGCTGAGGAAATGCAAGTGCGAGTCAGAAGGACAGCAGCAAGAGGAAGAGAGAAGCCAGTCCCCACCCTCAGCATCTCAGGAGACAGTTATTCCAAACCTGCAGGAGAATGTTTTGCAAAATGCCAGTCTCCAGCTAGATGTCTTGCCTCCTAGTACACAAGTGCTGTGTGCACCTCCAACGTAG
Protein Sequence: MHFRYIESPLYPPEVAGDCDPLFLNPMLNAGAVTFTRVGSVDFHIAYVWVDSNPHMSLPFHDCQPGLSGIPSSTLYKIARREGIRLSAPFNAAPTAWTPDDLERALEAIRKGEISVQRASTEFGIPTGTLYGRCKRVGIDLSTRGNVTAWTEDCMGKAMEAVRVGGMSINMASQQYSVPYSSLYGRLRKCKCESEGQQQEEERSQSPPSASQETVIPNLQENVLQNASLQLDVLPPSTQVLCAPPT

Sequence clustering based on sequence similarity using MMseqs2