Basic Information

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.036 3.3 9.0 0.8 3 19 51 67 49 72 0.89

2 6 2.1e-06 0.00019 22.3 3.9 2 23 79 101 78 101 0.95

3 6 0.00037 0.033 15.2 3.3 2 23 108 130 107 130 0.96

4 6 0.04 3.7 8.8 5.2 1 23 137 159 137 159 0.97

5 6 0.00026 0.023 15.7 7.3 3 23 167 188 165 188 0.95

6 6 2.8e-05 0.0025 18.8 1.1 2 23 194 216 193 216 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.036	3.3	9.0	0.8	3	19	51	67	49	72	0.89
2	6	2.1e-06	0.00019	22.3	3.9	2	23	79	101	78	101	0.95
3	6	0.00037	0.033	15.2	3.3	2	23	108	130	107	130	0.96
4	6	0.04	3.7	8.8	5.2	1	23	137	159	137	159	0.97
5	6	0.00026	0.023	15.7	7.3	3	23	167	188	165	188	0.95
6	6	2.8e-05	0.0025	18.8	1.1	2	23	194	216	193	216	0.95

Coding Sequence: ATGGTTGATAATAGAGCAAATTACATTCCAACCCCTATGTTCCAAGGGCCAGAGGGCACGAGGTACGCTGTAAATCCATTCGCGGCCCCAGAACCTACAAATCAGCGAGAGTTGTTGAAAAACAGAATAAGCGAGCAATTTTCGTTATTCTGCTCACACTGCGACCTCCCATTTGTGGACACTGTTGAATATGAGCACCATAACGTTGAACTACACGGTGGGAAGAAGATTTTAACGTGCAACCTTTGCGATGCGACGTTCCGAAGACAAGACCACTTGAAGCGCCACATTCACAGTTTACACAACAATCAAAAATACTGCGTGTGCCCGGTATGCGGAAAAGACTGTAAACGACAAGACATTTTACTTAAACATATAAAAAGGAAACATTCAACCACAACAGAAATCTTCCGCTGCAGAGAGTGCACATTTGAATGTGGAACACATTCGGAATTAGAAAAACATGAATTTACTCATATGTCTGTGGACAGACATTTATGTCCGCATTGTCAGACTACTTTTAAGAGAAGAGACCATATGCTTAGACATGTGAAATCGCAGCATATGAAGCAATTAATTGAATGCCCAATCTGCAGGCAATCATATAAAAGGAAGGATCATGTCGTAAGACATGTGAGGGAGAAACATAAGATGGGTTTACTGAATGGTAAACTTGTTAGTTCTGCTGATGTGGTATAA
Protein Sequence: MVDNRANYIPTPMFQGPEGTRYAVNPFAAPEPTNQRELLKNRISEQFSLFCSHCDLPFVDTVEYEHHNVELHGGKKILTCNLCDATFRRQDHLKRHIHSLHNNQKYCVCPVCGKDCKRQDILLKHIKRKHSTTTEIFRCRECTFECGTHSELEKHEFTHMSVDRHLCPHCQTTFKRRDHMLRHVKSQHMKQLIECPICRQSYKRKDHVVRHVREKHKMGLLNGKLVSSADVV

Sequence clustering based on sequence similarity using MMseqs2