Dlab003215.1
Basic Information
- Insect
- Dryobota labecula
- Gene Symbol
- ZEB2
- Assembly
- GCA_947523025.1
- Location
- OX383310.1:963058-964929[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.4 3.1e+02 2.7 1.1 2 23 307 329 306 329 0.86 2 10 0.15 13 7.1 1.8 1 23 335 357 335 357 0.98 3 10 0.00028 0.026 15.6 1.3 1 23 363 386 363 386 0.98 4 10 0.0011 0.096 13.8 0.4 1 21 391 411 391 412 0.95 5 10 2.1e-05 0.0019 19.2 0.4 2 23 426 447 425 447 0.97 6 10 3e-05 0.0028 18.6 0.3 1 23 453 475 453 475 0.95 7 10 4.5e-05 0.0041 18.1 2.1 1 23 482 504 482 504 0.96 8 10 3.6e-07 3.3e-05 24.7 3.7 1 23 510 532 510 532 0.99 9 10 4.8e-05 0.0044 18.0 1.8 1 23 537 559 537 559 0.95 10 10 0.00024 0.022 15.8 2.3 1 23 565 588 565 588 0.97
Sequence Information
- Coding Sequence
- ATGAATAACACAAAAGATGCAATGTACTGTCGCCTTTGCGCAGAGTTAAAACAACACAATAAACTCATAAACCTGCAGACTGACGAAGAAACATGCCAGAAAGTCGTCAATAAACTGTCACGATTCAACATAATTATGGATTTTCAAGAGAACGTATTGGCGAAGACTGTCTGCTTAATTTGTGTAAAATCCTTAGAACAAGCTTATGCTTTCGTAACTGCAGTTGAACAGGCGCAGGCATTTCTTAGTGACTATATTCTTGTACAAATAAATACAGCTGCAAGTGACTATTGTGATGAAAATATGTTATATGAGTCTCCAGATAACAAAAACGGTATTGTTAAGTTCAAAGACGAACACAGTCAAGATTCAATGGCAGTAAGTGATAATGGTCCAAATTTAAGTGAAAAATGTGAAAGAGAGGTCATGATTGAAGTGTATAACGATTTTGATTATTCAGCGGTTAATGGAAACACTGAAGAACATATAATTGAGTATAAGCATAATATACAACCTTCTAATGGAATTATTGATGAAAGTACTGGTTTAAAGCATGAACATGTTGAAACTCTTGATTTATACCATGCTGAAGATAAAAAAAACATCATAAAAAATACATTAGAAATAGAAATTGATTCTGAACCAATTCTATTTGACAGTACAGTTTGTTCTGCAGATTACTTAAATGAACAAAATGATAGTAAAGAAGGTGCCAAAACAATGGATAAATGTGTACAACAATTACAATCACAAGAATGTAGTTCTACAAAAATTCCACCCAAACGATTGGCTACTAAAACTAACATAAATAAAATGGAGAAAACAAAAATAAAAAAACATAAGCTTGGTAACATGTCCACCAAAAATACAGATGCAGATGTAGAACATATCAAATTGACATGGCAGGATTATGAATGGAAGTGCTATTGTTGTGAAACACTATTCCCGAATATTGATGAGCTACAGAAACATTCAATGCAGTACCACAACACCTGTAACCCTTACCAATGCACTGACTGTGTAACCAGATGCGCAGGTCTCATACGTTTTATAAAACATGTTAGAAAACACAACAATTACTTACGTTATTCTTGCTATAAATGCTTCAAGAAATTCCCTAACCCGTATCAAGCTGCGAAGCATATAAAGAAAGTTCATGCAGACTCTGACTATGTTTGCTCAGGGTGCAACAATCCTTTTCACAGTAACAGCGAATTAAAGGAGCATGTTAACAAATATAACAAACAGTTGTTTATAAAAACACCATTTGATTTGAAGTGCAGTATCTGCAATAAGAGTACTGAAAATGCTATCGATTTGCGAAAACATTTACTTACTCACCAGAACAAAAAGAAGTATGTTTGTGAAACTTGTGGCAAATTGTTTGCAAATAAACAACAATTAAGAGCACATACAGTTCTACATAGTGCTGTAAAGATTTTGCATCCCTGTGATATATGTAACGCCTCCTTTATTCGTGTAAGCCATTTACGACGCCACAAAAGCATTCACACTGAAATCAAACCGTTTACCTGTGACCACTGCGGAAAAAGTTTCCGTACGAAGTCTTATGTTGCTAACCATTTGAAAACTCACATGGACCCACTCTATCCTTGTACACTGTGCAATAAAAAATTTCGTTCAGCCCCCAATTTGAAAAGTCACAAGTTTCAGCATACTGGAGAGAAACCATTTTCTTGTAATTTTTGTCCGAGAGACTTTACAAACCTGCCCAATCGTAACAAACATATGAAACGTAGACATGGTATTGAGATGGGAAAAATAAAACAGCAAATAGCTGATGACCTGACTTCCTCAGATCTAGCTACCGGAGACGCTAAATTTGTAGATCTCGACAAAATGGTCAATTAA
- Protein Sequence
- MNNTKDAMYCRLCAELKQHNKLINLQTDEETCQKVVNKLSRFNIIMDFQENVLAKTVCLICVKSLEQAYAFVTAVEQAQAFLSDYILVQINTAASDYCDENMLYESPDNKNGIVKFKDEHSQDSMAVSDNGPNLSEKCEREVMIEVYNDFDYSAVNGNTEEHIIEYKHNIQPSNGIIDESTGLKHEHVETLDLYHAEDKKNIIKNTLEIEIDSEPILFDSTVCSADYLNEQNDSKEGAKTMDKCVQQLQSQECSSTKIPPKRLATKTNINKMEKTKIKKHKLGNMSTKNTDADVEHIKLTWQDYEWKCYCCETLFPNIDELQKHSMQYHNTCNPYQCTDCVTRCAGLIRFIKHVRKHNNYLRYSCYKCFKKFPNPYQAAKHIKKVHADSDYVCSGCNNPFHSNSELKEHVNKYNKQLFIKTPFDLKCSICNKSTENAIDLRKHLLTHQNKKKYVCETCGKLFANKQQLRAHTVLHSAVKILHPCDICNASFIRVSHLRRHKSIHTEIKPFTCDHCGKSFRTKSYVANHLKTHMDPLYPCTLCNKKFRSAPNLKSHKFQHTGEKPFSCNFCPRDFTNLPNRNKHMKRRHGIEMGKIKQQIADDLTSSDLATGDAKFVDLDKMVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -