Dlab025027.1
Basic Information
- Insect
- Dryobota labecula
- Gene Symbol
- Bcl11b
- Assembly
- GCA_947523025.1
- Location
- OX383295.1:23120604-23142284[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.045 4.1 8.7 8.6 1 23 131 153 131 153 0.96 2 12 5.8e-06 0.00053 20.9 1.9 2 23 161 182 160 182 0.95 3 12 0.049 4.5 8.5 0.3 1 23 186 208 186 208 0.97 4 12 0.00031 0.029 15.5 3.0 1 23 213 236 213 236 0.97 5 12 0.00099 0.09 13.9 0.2 3 23 242 263 241 263 0.96 6 12 0.0024 0.22 12.7 0.2 2 20 279 297 279 303 0.93 7 12 0.00033 0.03 15.4 0.1 3 23 313 334 313 334 0.95 8 12 0.00034 0.031 15.4 1.1 2 23 357 379 357 379 0.96 9 12 0.055 5 8.4 2.7 2 23 391 412 390 412 0.95 10 12 0.00013 0.012 16.6 4.9 1 23 418 440 418 440 0.99 11 12 1.6e-06 0.00015 22.7 0.3 1 23 446 468 446 468 0.98 12 12 0.00051 0.047 14.8 0.9 1 23 474 497 474 497 0.98
Sequence Information
- Coding Sequence
- ATGGTCCCAAGTATCAAATATCTAGGCGTTTATATCGACGAGAGACTGGATTGGCGCACCCATACTGATACTCTATGCTCCCGGCTTCGCAAACTAATTTATTTATTTAAAGAGCTCAGACATGCAGCCGACATTGAAACAGTATCACTAGTATACCGTTCTCTATGCGAGTCGATAATTACTTACTGCATCCCGGTATGGGGCGGTACCTTCAAAACAGTGATGCTTAGGGTGGAACGAGCTCAGCGGGCTGTTCTCAAAGTTATTTATTTCCGCAAAAGGGACTACCCCACAGCTCAGTTGTACTCAGAAGCCCAAGTACTAACGATTGAGGATCAGTTAGAAGAGATAAACAAACGCAAGCTGTCGTCGAACTACCTCGACTGTCCGTACAAGTGCCACCAGTGCTACAGGGGGTTCAACAACACGCACGCGTGGAAACATCACCTCACCAAACACTCGCCGAACCTCGGTGACATAGAGTGCAAAATCTGCAAGTACAGGTTTAAAACGAAACGCAATCTTCAGAGACATGCCCTAAATCACGGGAAGAGATATGTTTGCAATTTATGTCCATACAACTCTAGTAATATAACAACTGTGAAACAGCATCAAGGGTCACACAAAGGAGTCACGCATAAATGCAAGTTTTGTGATGAAGTTTTCAATGTAAGAACGACCTATGTTAGTCACATGCGAATCAAACATCCATCCGAAAATATTTGCGGGTTCTGTGGGTACTCATTCTACAGCAAGCAAGGGCTCGTGGTACATAAGAATATGATGCACAAGGATCTTGAATCAAAACAAGAAGAAAACACAGAAGACGGCCCATATTGCGAAGATTGTGACGTCAAATTCATATCGACGGAGGCGTACAAGAGACACATGGTGATGTCAGTCAAGCACACGCGGAGTACTGACTGTATGAATGGGTGCCGTGTTTGCGGCGAGATGTTCACGGACCCTGAAGAGCTACGTCTGCACAATCGTGAAGAGCATCCTAAGAAACAACCGAAGCACTACAATTATCAACGGAAGAACCAAATTCGAACCAAATGGCCCGCCAAATGTCAACATTGTCCAGAAGAATTTGCCACCCCGCGATCTTACTGGAACCATTACCGACTCCAGCATCCCGATAAGTACGAGCCAGTGCGGAAGAATTGCGTCTGTGATATATGCGGCAAGAGATACGCGTGTAACGCCGTCCTCTCTATGCACAAACGCACCCACTTCGGGGAGCGTCCGTACAAATGCTCTCAATGCGACAAGGCCTGCTTCTCTGCGCACGACCTGCGCGTTCATCAGCAGAAACATTCCGACATGCGACCCTTCCCCTGCAGCGTGTGCTCCCAAGCTTTTAAGCGGAAAGAAGCGCTGGAAAGGCATTTGAAAATCCATTCCGGCGACAACCCTTATAAGTGTGAGATTTGTGGCGTAGCTTTCGCCAAGTCTTGCACGAGGACACTTCACGTGCGCACAGTACATACTAAAGAACCCCCGCCCCCGCGCAAACGACGGAACAAGGTGAACAAATAA
- Protein Sequence
- MVPSIKYLGVYIDERLDWRTHTDTLCSRLRKLIYLFKELRHAADIETVSLVYRSLCESIITYCIPVWGGTFKTVMLRVERAQRAVLKVIYFRKRDYPTAQLYSEAQVLTIEDQLEEINKRKLSSNYLDCPYKCHQCYRGFNNTHAWKHHLTKHSPNLGDIECKICKYRFKTKRNLQRHALNHGKRYVCNLCPYNSSNITTVKQHQGSHKGVTHKCKFCDEVFNVRTTYVSHMRIKHPSENICGFCGYSFYSKQGLVVHKNMMHKDLESKQEENTEDGPYCEDCDVKFISTEAYKRHMVMSVKHTRSTDCMNGCRVCGEMFTDPEELRLHNREEHPKKQPKHYNYQRKNQIRTKWPAKCQHCPEEFATPRSYWNHYRLQHPDKYEPVRKNCVCDICGKRYACNAVLSMHKRTHFGERPYKCSQCDKACFSAHDLRVHQQKHSDMRPFPCSVCSQAFKRKEALERHLKIHSGDNPYKCEICGVAFAKSCTRTLHVRTVHTKEPPPPRKRRNKVNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -