Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.26 1.3e+02 3.1 0.0 27 36 19 29 17 31 0.87

2 10 0.26 1.3e+02 3.1 0.0 27 36 35 44 35 46 0.87

3 10 0.095 45 4.5 0.0 27 36 67 76 59 78 0.85

4 10 9.1 4.4e+03 -1.9 0.0 27 36 83 92 83 93 0.87

5 10 0.14 69 3.9 0.0 27 36 99 108 99 110 0.89

6 10 7.5 3.6e+03 -1.6 0.0 27 36 115 124 115 126 0.88

7 10 0.15 71 3.9 0.0 27 36 131 140 128 141 0.92

8 10 3.2 1.5e+03 -0.4 0.0 27 36 147 156 147 157 0.83

9 10 0.099 47 4.4 0.0 27 36 179 188 179 190 0.93

10 10 3.4 1.6e+03 -0.5 0.0 28 36 212 220 212 221 0.90

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.26	1.3e+02	3.1	27	36	19	29	17	31	0.87
2	10	0.26	1.3e+02	3.1	27	36	35	44	35	46	0.87
3	10	0.095	45	4.5	27	36	67	76	59	78	0.85
4	10	9.1	4.4e+03	-1.9	27	36	83	92	83	93	0.87
5	10	0.14	69	3.9	27	36	99	108	99	110	0.89
6	10	7.5	3.6e+03	-1.6	27	36	115	124	115	126	0.88
7	10	0.15	71	3.9	27	36	131	140	128	141	0.92
8	10	3.2	1.5e+03	-0.4	27	36	147	156	147	157	0.83
9	10	0.099	47	4.4	27	36	179	188	179	190	0.93
10	10	3.4	1.6e+03	-0.5	28	36	212	220	212	221	0.90

Coding Sequence: ATGAAGGACATCAACCGGAGCATGTTGCACCGCCGTGCTGCTCCGTGCAAGAAGGACATCAACCGGAGCACGTTGCACCACCGCGCTGTTCCGTGCAAGAAGAACATCAACCGGAGCACGTTGCACCGCCGTGCTGCTCCGTGCAAGAAGGACATCAACCAGCACACGTTGCACCATCACGCTGCTTCGTGCAAGAAGGACATCAACCGGAGCACGTTGCACCGCCGTGCTGCTCCGTGCAAGAAGGATATCAACCAGCATACGTTGCACCGGTACGCTGCTCCGTGCATGAAGGACATCAACCGGAGCACGTTGCACCGCCGTGCTGCTCCGTGCAAGAAGGATATCAACCAGCACACGTTGCACCGTCACGCTGCTCCGTGCAAGAATGACATCAACCGAAGCACGTTGTACCGCTGTGCTGCTCCGTGTAAGAAGGACATCAAACGGAGCACGTTGCACCGTCACGCTGCTCCGTGCAAGAGGGACATGAACCAGCACACTTTGCACCGTCACGCTACTCCGTGCAAGAAGGGCATCAACCGGAGCACGTTACACCGCCACGCTGCTCCATGCCAGAAGCACATTAACCGGCGCACGTTGATCCGCTGCGCTGTTCCGTACAAGAAGGTCATCAACCGCCGCACGTTGCACCGTCACGCTGCTCCGTGCAAGAAGGACACCAACGTGCACACTTCTTATCTACAATATTAA
Protein Sequence: MKDINRSMLHRRAAPCKKDINRSTLHHRAVPCKKNINRSTLHRRAAPCKKDINQHTLHHHAASCKKDINRSTLHRRAAPCKKDINQHTLHRYAAPCMKDINRSTLHRRAAPCKKDINQHTLHRHAAPCKNDINRSTLYRCAAPCKKDIKRSTLHRHAAPCKRDMNQHTLHRHATPCKKGINRSTLHRHAAPCQKHINRRTLIRCAVPYKKVINRRTLHRHAAPCKKDTNVHTSYLQY

Sequence clustering based on sequence similarity using MMseqs2