Druf004886.1
Basic Information
- Insect
- Drymonia ruficornis
- Gene Symbol
- -
- Assembly
- GCA_947859195.1
- Location
- OX401917.1:9747326-9758610[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.077 4.6 8.0 5.0 2 23 306 327 305 327 0.97 2 11 0.00024 0.014 15.9 0.3 1 23 334 356 334 356 0.98 3 11 0.033 2 9.1 0.3 2 19 390 407 390 412 0.89 4 11 0.00063 0.038 14.5 0.2 2 23 417 438 416 438 0.97 5 11 0.86 52 4.7 0.5 2 23 448 469 447 469 0.93 6 11 2.4 1.4e+02 3.3 0.7 6 21 480 495 480 500 0.94 7 11 0.1 6.2 7.6 0.2 2 23 509 531 509 531 0.93 8 11 4.5 2.7e+02 2.4 0.3 1 10 537 546 537 550 0.82 9 11 2.1e-06 0.00013 22.3 3.0 1 23 561 584 561 584 0.98 10 11 6.5e-05 0.0039 17.6 0.5 3 23 595 615 594 615 0.98 11 11 0.00074 0.044 14.3 1.0 1 23 621 644 621 644 0.96
Sequence Information
- Coding Sequence
- ATGAACGAGACTATTTCAAAAAATCCCCTCTACAATGAAATAATGAAAAACAGGTGTCTGACTTGTTACAAAGAAGAAAAACGTTTAGTTCCCTTGACTGAAAAGAGATTACTGAAAACGTTTGTTCCTGAAATCACTTTAACGCATGAAGACCGAGTTTGTGAGAGCTGTGATTCCATGTTGAAGGCAATAATGACGTTCAGGAACACAGTGCTGACCGCACAGCTGCTGCTGAAGACAGCGTACGAACAACAGTCCCAGGATATTGAGGAGAAGATTTCTATAACAAAGATATCAAAAGAAGATGTCAGCCATTGCTCCACTCTTTCTTTTGAATACTTCCCGCAAACCATAAAACATGATACGGATATAAAAGAAGAATCAATTGATACAGAGCCAGCTACAGACAATTTAGAAGACTCCTTGCATGGGGACCCCATTCCAGAAGATTTCATAATACATGAAGAGGTAGATATAAAAACAGAATCAACTGACACTGACCAATGTTCAGTAGATTCCGATGAAATGTTGTCTGCAAACCTAACGTCAGCAGATGAGGACCATGAAATTTCAATTAACGGTATGTGGTTCAACAGCGAAGTTACCGAAGGAAATAAAGTTGCATCAAACTCAACTAAAGTGAATTCTGATAAGAATTCACCATTGCTGACAACATTTCTAAAGAACGTACCGCGAAAGGAAAATAAAATAAGACTGTCTGAGGAAAATACTATCAGTGATGATCCCGCTATCAAAAATGCTGAAAAAAAATCCCATGATGATCCCTTCAAAGATGGTACGATAGTGATGAGGCGCGATGACCAAGCGTTTATAGTGAAAGTGTTGAGTGAAGCCGAAATGCAAGCTGATAGAGAGTATAAAAGGACGCAACGCCATTACGTTGAATCGAAATTGAGATGCGAAATGTGTATATTGATGTATAAATCGCATAATCATTATGAAAAACATATGAAGACGCATGATTTGAGCGCTGGTAGGTTTCCATGCACTATATGTCAGCAGAGGTTTCCCAACATTGCAGATATGGAAACACACAGGAAAACACATTACATTAAATACGTGTGTATTAAATGCAATAATTATGGGTGTACATCATTGGAGCTAGCGCAGTTGCATTTCGACCGCCAGCATTATGTAGTGAAACGGACTTGCAACAAGTGTGGGGCTGTGTTCAATTTGTACACAGAGCTACTTAAACACGATATGAGGGTACACAGCACACAATCAAAATGCACAGAGTGTGGAGTCGTCATCCGTGGAAAGTACAATATGAAGGCACACATGGCACGCCACAAAGGAAATAAGCCAACAAAAATAGTGGAATGTAATGTTTGCAAGAAGAAAATGGATGTGAATAAATTAAGAGGGCACATGAAAACTGTACACAATCCGGACGGTGAAGCTTACTGCATACCATGCGACCAGACTTTCAAAGGCGAACATCTATATCGGATACACCTTAAGCAATCTCAGAAACATAACTCCGTGGAAAGTTTCAAAGCCCAATGCGAAGTGTGTGGAAGGTGGTTAGGATCCAGAAAAAGTCTAGAACATCACATGGAGGCAGTGCACAACGATACCGCCAAGTACCCGTGCGAGAAGTGTGACGAGGTGAGTGACCACCGCCAAGTACAAGTGCAACCAGTGACCGCCGCCGAGTACCCGTGCGACAAGTGCGACCAGAAATTTAAAACTTTGAAGAGTCTGAGGTCACATATGCGTAAGAAGCACGAGAACGTCGCGCGGATAAGGGACAAGATATGCGAACAGTGCGGGAAGGGCTTCTTTCTTAAGAAGACTCTGGAGGAGCATATGAACACGCATACCGGCGCACGGCCGCACTCGTGCGCCGACTGCGGCGTCAGCTTCGGGTTTAAGGCGGCGCTGTTCACGCACCGCAGACTCAAACACAAGGTCAAGAGGAAGAAAGATATATAA
- Protein Sequence
- MNETISKNPLYNEIMKNRCLTCYKEEKRLVPLTEKRLLKTFVPEITLTHEDRVCESCDSMLKAIMTFRNTVLTAQLLLKTAYEQQSQDIEEKISITKISKEDVSHCSTLSFEYFPQTIKHDTDIKEESIDTEPATDNLEDSLHGDPIPEDFIIHEEVDIKTESTDTDQCSVDSDEMLSANLTSADEDHEISINGMWFNSEVTEGNKVASNSTKVNSDKNSPLLTTFLKNVPRKENKIRLSEENTISDDPAIKNAEKKSHDDPFKDGTIVMRRDDQAFIVKVLSEAEMQADREYKRTQRHYVESKLRCEMCILMYKSHNHYEKHMKTHDLSAGRFPCTICQQRFPNIADMETHRKTHYIKYVCIKCNNYGCTSLELAQLHFDRQHYVVKRTCNKCGAVFNLYTELLKHDMRVHSTQSKCTECGVVIRGKYNMKAHMARHKGNKPTKIVECNVCKKKMDVNKLRGHMKTVHNPDGEAYCIPCDQTFKGEHLYRIHLKQSQKHNSVESFKAQCEVCGRWLGSRKSLEHHMEAVHNDTAKYPCEKCDEVSDHRQVQVQPVTAAEYPCDKCDQKFKTLKSLRSHMRKKHENVARIRDKICEQCGKGFFLKKTLEEHMNTHTGARPHSCADCGVSFGFKAALFTHRRLKHKVKRKKDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -