Druf001740.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drymonia ruficornis
Gene Symbol
-
Assembly
GCA_947859195.1
Location
OX401930.1:7682298-7683876[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.047 2.8 8.6 0.3 1 23 163 186 163 186 0.95
2 10 6.7 4e+02 1.9 0.1 2 19 190 207 189 210 0.88
3 10 0.012 0.69 10.6 5.2 1 23 214 237 214 237 0.96
4 10 5.8e-06 0.00035 20.9 0.7 1 23 240 262 240 262 0.98
5 10 7.8e-05 0.0047 17.4 0.4 2 21 267 286 266 287 0.94
6 10 1.4e-05 0.00084 19.7 0.3 1 23 306 329 306 329 0.94
7 10 1.8e-05 0.0011 19.4 3.0 1 23 335 357 335 357 0.97
8 10 0.0012 0.073 13.6 1.0 1 23 363 385 363 385 0.99
9 10 0.00069 0.041 14.4 0.3 1 23 391 414 391 414 0.95
10 10 9.8e-06 0.00059 20.2 2.4 2 23 420 441 419 442 0.94

Sequence Information

Coding Sequence
ATGGTCGAGGAATCAGAAATGAATGTTCTAGTATCGAACATCGTGAGCGAAATCCGCTATAGTCATTGTAGGTTATGTTTAAAACTTAATGTGGATGACAATTACGTGAGTTTCGAAGACGCTGTGTCGCTGGACCAACCCAGCAGGACCTTCCAACCACTTTCTGATATACTTGCCGAACTCCTGGGCGCCGAGATCTGTGAAGAAATCATTGGTATAGATGCTGTATGCATGGAGTGTGTGAACAAGGCCCTGGAAACTAAAATATTCCTCCAAAAATGTGAGAACTCCACGAGACTACTTCATAACATATTTAACAACCTAATAAACACACTGAGTGTGGACATTGATGTCGCTGAGGACTCCGAAAACCAACAAAGTTTGTACATAACAGTTCAGGAAGATGACGTCAAACTTATTTTTGCAAATAATGAAGAAGCACAGAATTTTAATCCTACTAAGAAACAAAAAAAAACGAGTGATAGTTTCCCTTGTGTGGAATGCTCTCAACATTTTGATAGTATAATTGACCTCAAAATGCATAACATTACTGAACATGCATTGTTAACTTGTGAGAAATGTTTGGACACATTCCAAAATGATGACGAACTGTCCACTCATGAGATAAGCGAGTCTATGTTCAAATGCACATCATGTAAAATCTCCAGATGTACAAGAGACAGTCTGAAGAAACACCAAGACAAACTGCACGGAGTGTATGTATGTAAAGACTGTGGAAAATCATTCCAAGGCTTAAGTAAACTGCAAAATCATGAACTGAAACATGTAACTAAAAGTGAGTGTCCCAAGTGTGGGAAAAGTTACAATACCAAAGAATTCTTCTTAAAACATGTCAGATTATGTGTGGAAGATCGTCTGGACCCACATCCTATAAGAAGTAAAATGGAAAAGAAATACTCTTGTAATAAATGTGGGAAAGGCTACAGCACTCCCGGCGGGCTGAGGGTCCACAACAGATTTATACACGGGAATGCACAGCCACATACATGTAAATACTGTCAGAAGCAGTTCACTGCTCCGAGTTACTTGAAAGTTCACATGGTGAAACATACTGGAGAGAAGAACTACAAGTGTGCGTTGTGCATGAAGAATTTTGTCTCCAAAGAGGCGTTACTGTATCACACTAGAAGACACACCGGCGAAAAGCCGTATAGTTGTACGATGTGCGATGAACGGTTTGTGAACGCGTCCGCTCGAGCCGAACATATAAAGTTCAAACACGTGGAGCCGACGTTGATGTGCGAGATTTGCTCGCGCAAGTTCGTCACACCCAGCTTCTTGAGACAGCACTTAAGGAAACACCATGACCCATCTAATAAATTGTATATGGGCAGGAGTATAGTTCCCGCGAATATACCCGCCGTTGAAAATATTCGGTTGCCATTTTATATTGACAATAATGAAATTAAAAAAATTTAA
Protein Sequence
MVEESEMNVLVSNIVSEIRYSHCRLCLKLNVDDNYVSFEDAVSLDQPSRTFQPLSDILAELLGAEICEEIIGIDAVCMECVNKALETKIFLQKCENSTRLLHNIFNNLINTLSVDIDVAEDSENQQSLYITVQEDDVKLIFANNEEAQNFNPTKKQKKTSDSFPCVECSQHFDSIIDLKMHNITEHALLTCEKCLDTFQNDDELSTHEISESMFKCTSCKISRCTRDSLKKHQDKLHGVYVCKDCGKSFQGLSKLQNHELKHVTKSECPKCGKSYNTKEFFLKHVRLCVEDRLDPHPIRSKMEKKYSCNKCGKGYSTPGGLRVHNRFIHGNAQPHTCKYCQKQFTAPSYLKVHMVKHTGEKNYKCALCMKNFVSKEALLYHTRRHTGEKPYSCTMCDERFVNASARAEHIKFKHVEPTLMCEICSRKFVTPSFLRQHLRKHHDPSNKLYMGRSIVPANIPAVENIRLPFYIDNNEIKKI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01073860;
90% Identity
-
80% Identity
-