Druf004826.1
Basic Information
- Insect
- Drymonia ruficornis
- Gene Symbol
- -
- Assembly
- GCA_947859195.1
- Location
- OX401917.1:8935037-8937367[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 2.6e-06 0.00016 22.0 4.1 1 23 8 31 8 31 0.95 2 20 0.0023 0.14 12.7 0.3 2 23 37 59 36 59 0.95 3 20 2.7e-05 0.0016 18.8 0.3 2 23 68 90 68 90 0.97 4 20 2.6e-05 0.0016 18.9 1.5 2 23 99 121 98 121 0.94 5 20 4e-05 0.0024 18.3 2.5 2 23 129 151 129 151 0.96 6 20 8.5e-07 5.1e-05 23.6 1.9 2 23 160 182 159 182 0.96 7 20 2.6e-06 0.00016 22.0 1.0 1 23 188 211 188 211 0.98 8 20 0.076 4.6 8.0 1.3 1 23 219 241 219 242 0.95 9 20 3.8e-05 0.0023 18.4 0.4 1 23 253 276 253 276 0.98 10 20 0.00055 0.033 14.7 0.7 1 23 301 324 301 324 0.98 11 20 0.23 14 6.5 0.5 2 21 332 351 331 352 0.93 12 20 0.016 0.95 10.1 2.2 2 23 361 383 361 383 0.95 13 20 0.0015 0.092 13.3 6.1 1 23 404 427 404 427 0.97 14 20 0.0013 0.08 13.5 0.5 2 23 434 456 433 456 0.96 15 20 3.9e-05 0.0024 18.3 1.7 2 23 463 485 462 485 0.94 16 20 0.044 2.7 8.7 3.8 1 23 491 514 491 514 0.95 17 20 0.17 10 6.9 7.1 2 23 522 544 522 544 0.95 18 20 1.6e-05 0.00096 19.5 1.0 1 23 551 574 551 574 0.98 19 20 0.016 0.96 10.1 1.9 1 23 581 604 581 604 0.91 20 20 0.0059 0.35 11.5 2.7 2 23 618 640 618 640 0.95
Sequence Information
- Coding Sequence
- ATGTTTCAAAACCAATTAGATTACGTCTGCGACTATTGCTCCAGAACGTTCACAAGAAAATATAATCTCCAAACCCACATAGAGAATTGTCATATTAATTCTTCATGCTATTGCGATATATGTGAACAGAAATTCGGCAGTCCAGCCGGCTTGCAGTTACATTTGAGTAGAGGACACAATTCATACGGTCAGCCATTACCAGAATGTGATTTGTGCGGCCGTATCTTCACTAGAAAGCAGAACATAATGTCTCATATGATCACAGTGCATTTACAAGGCCTAGGGTCTGATATACGTTGCAGATTATGCGAGAAAACGTTCACAACTGAACGTAATCTAAAGAGACATGTGAACCAATTGCATAATCCTGATGTTCAGTACCCAACATGCAATGACTGCCATAAGATATTTAAAGGCAAACATTCCTTGATAGCTCACATACAATCTGTTCACAATTCTAATGACAAGGACTTCATTAAGTGTCATTTATGCGATAAAGTTTACACAAACAATCGCAATCTGAAGAGGCATATAGAAATGCTGCATGGCGAGAAGGGGGAATACAGATGTGGTATATGCCCTAAGATTTACACGTCCAATCAGAGTTTGAGACGTCACGAGCGCACTCGACACAGTACCGATAGTAATGATCAATACAAATGCGAGTATTGCTCTAAAATCATCATTGGCAGGGAGAATTACGATAGTCATGTACAGTATCATCACAGCACAGATACTGATAGCAAAATGGACGATTTCACTTGCGATTCGTGCGGAAAAAGTTACGGCGAAGAATCAGATTTGCGTTTGCATATCAAAACTAAACACTCTTTCGATTTGTTCTATAAATACTGCAAGGAATCATTGTTAAAACAACAGTCTGAGCTTAGGAAGAGTGTATACAGTTGCGAGCTCTGTTTTAACGCATTTCCGAGTGTGTACAAGCTCAAGGACCATATGAGAACGAACCATGATACCGAATACTCGTTATCAACTTGCAATGTTTGTTTCAACAAGTTTTACAGCAAAGAGACCATGATAGCACACAAGAAAGTGTGCCTGCCACCTCCAAACGTTAATTCCTGCAGTCATTGCGACAAACTCTTCACTGATATATCCAGTTTAGAGTTTCATACGCGCATTTTCCATCCCCAAGCTCAGATAGCTGACTCTAACATCACATCAACTAACATTGAGGAAGACGGCTCCTTCAAATGCGAGCATTGCGATCGGATTTATTACAGCGATAGATCATTAAAGCATCACATGAAATTAAAACATACATCAGATGAAGCGGTAGAGTGCGAATTTTGCGCAAAAATCTGTAGCAACAAATACTATTTAGCGTCTCACATTAAAATCGTTCATAGTGAGAGTGCTTGGTCTAGCTGTGAATACTGCGACAAGCAGTTCAAGTCTAAAAGGAACATTAGACGACATATAGAGTACACTCATTTGGGGATGCAAAGGCACAAATGTATTGAGTGCGAAACGTTATTTAAAGAGAAACGTAGTCTACGGAAACACGTTAGGACAAAACACCCTAACTCGGCGTCTTTTCCTCAGTGCCATATATGCCACAAAAGGTTCGAGTCGGCAAAATCCTGTAAAATACATCTAAAGTTGCTGCATTCCTTCAATATGAACACTTATCCATGCCACTTATGTTCAGTTTCGTTCAGTTCAAATGAGGCTTTGACTATACATCTGAAAACTAAGCATTTAGCTGAGGACGAGATTTACAAATGCGAAGAATGTAACCTAGTCTTTAAGGGTCAGGAAAAGTTCGATAACCATAACGAAATATGCCACGTGAACTTGGTGCCTAATATCAAACAGAAGGTACTACCCCGATGTGTGCTATGCATAAAGGATTTTAGCACCCGTAAAACCCTGAAACGACATATTAAAAAATTCCACCAAGAGTTTGAAGTTGACGATTTGGCGAACTTTGGAACGAGACGAAGAAGCTTCACTGTTGATTGTGAAGACTGCATTAAGAATTTCAACGACGACTTTTACCACAACATCTATCTGAAACTCAAGCATTTGAAGAATTCGATAATTTTTAAGTGCGAGAATTGCTTATCATCTTACAATTGTGTAGAGTACGCTGTTCAGAGGTATAGAGTGATGAATGTAGATTTGTGCCGCAGCAAAATGATTCTTAGTGAACTTTGCACGACTGAGATGAGTGATGACGAAGCTACAGGCTCTGGGTTCGGGTCGTTTCATGATATGTTACCTGAGAGTACTACTCTTGATATCAAATCGGAGCTGGTGGAGTATATTTCGGAAGGGGAAATTAAGTCTGAACCTATGTCCCCCTAA
- Protein Sequence
- MFQNQLDYVCDYCSRTFTRKYNLQTHIENCHINSSCYCDICEQKFGSPAGLQLHLSRGHNSYGQPLPECDLCGRIFTRKQNIMSHMITVHLQGLGSDIRCRLCEKTFTTERNLKRHVNQLHNPDVQYPTCNDCHKIFKGKHSLIAHIQSVHNSNDKDFIKCHLCDKVYTNNRNLKRHIEMLHGEKGEYRCGICPKIYTSNQSLRRHERTRHSTDSNDQYKCEYCSKIIIGRENYDSHVQYHHSTDTDSKMDDFTCDSCGKSYGEESDLRLHIKTKHSFDLFYKYCKESLLKQQSELRKSVYSCELCFNAFPSVYKLKDHMRTNHDTEYSLSTCNVCFNKFYSKETMIAHKKVCLPPPNVNSCSHCDKLFTDISSLEFHTRIFHPQAQIADSNITSTNIEEDGSFKCEHCDRIYYSDRSLKHHMKLKHTSDEAVECEFCAKICSNKYYLASHIKIVHSESAWSSCEYCDKQFKSKRNIRRHIEYTHLGMQRHKCIECETLFKEKRSLRKHVRTKHPNSASFPQCHICHKRFESAKSCKIHLKLLHSFNMNTYPCHLCSVSFSSNEALTIHLKTKHLAEDEIYKCEECNLVFKGQEKFDNHNEICHVNLVPNIKQKVLPRCVLCIKDFSTRKTLKRHIKKFHQEFEVDDLANFGTRRRSFTVDCEDCIKNFNDDFYHNIYLKLKHLKNSIIFKCENCLSSYNCVEYAVQRYRVMNVDLCRSKMILSELCTTEMSDDEATGSGFGSFHDMLPESTTLDIKSELVEYISEGEIKSEPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01179674;
- 90% Identity
- iTF_01073789;
- 80% Identity
- -