Basic Information

Transcription Factor Domain

TF Family: ARID
Domain: ARID domain
PFAM: PF01388
TF Group: Helix-turn-helix
Description: This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2.1 3.5e+03 -1.5 0.0 26 37 2 13 1 28 0.86

2 8 0.061 1e+02 3.4 0.0 23 38 30 45 19 55 0.85

3 8 0.057 98 3.5 0.0 23 38 61 76 50 89 0.85

4 8 0.058 99 3.5 0.0 23 38 92 107 80 118 0.85

5 8 0.057 98 3.5 0.0 23 38 123 138 112 151 0.85

6 8 0.059 1e+02 3.5 0.0 23 38 154 169 143 180 0.85

7 8 0.061 1e+02 3.4 0.0 23 38 185 200 174 210 0.85

8 8 0.049 83 3.7 0.0 23 38 216 231 205 248 0.83

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2.1	3.5e+03	-1.5	26	37	2	13	1	28	0.86
2	8	0.061	1e+02	3.4	23	38	30	45	19	55	0.85
3	8	0.057	98	3.5	23	38	61	76	50	89	0.85
4	8	0.058	99	3.5	23	38	92	107	80	118	0.85
5	8	0.057	98	3.5	23	38	123	138	112	151	0.85
6	8	0.059	1e+02	3.5	23	38	154	169	143	180	0.85
7	8	0.061	1e+02	3.4	23	38	185	200	174	210	0.85
8	8	0.049	83	3.7	23	38	216	231	205	248	0.83

Coding Sequence: ATGATCTGCGGGAAGCATATCCATGTTCACCACTTATTCTATGGAACCACGGGGAATACTAGAGACGTCCAGTATCTGGCGTTATTAGCCCCCATGATATGCGGGAAGCATATCCATGTTCACCACTTATTCGATGGAACCACGGGGAATACTAGAGACGTCCAGTATCTGGCGTTATTAGCCCCCATGATCTGCGGGAAGCATATCCATGTTCACCACTTATTCGATGGAACCACGGGGAATACTAGAGACGTCCAGTATCTGGCGTTATTAGCCCCCATGATATGCGGGAAGCATATCCATGTTCACCACTTATTCGATGGAACCACGGGGAATACTAGAGACGTCCAGTATCTGGCGTTATTAGCCCCCATGATCTGCGGGAAGCATATCCATGTTCACCACTTATTCGATGGAACCACGGGGAATACTAGAGACGTCCAGTATCTGGCGTTATTAGCCCCCATGATATGCGGGAAGCATATCCATGTTCACCACTTATTCGATGGAACCACGGGGAATACTAGAGACGTCCAGTATCTGGCGTTATTAGCCCCCATGATATGCGGGAAGCATATCCATGTTCACCACTTATTCGATGGAACCACGGGGAATACTAGAGACGTCCAGTATCTGGCGTTATTAGCCCCCATGATATGCGGGAAGCATATCCATGTTCACCACTTATTCGATGGAACCACGGGGAATACTAGAGACGTCCAGTATCAAACACTACTAGCAAACAAGCCTTATCTCTTCAAACAGCGGTCTTCTAATAAAATTAACGTGTTGAGTCCAATTTTAATGGGGATGTCGTTAAAATTCCTAATTTTCATAACAAAATAA
Protein Sequence: MICGKHIHVHHLFYGTTGNTRDVQYLALLAPMICGKHIHVHHLFDGTTGNTRDVQYLALLAPMICGKHIHVHHLFDGTTGNTRDVQYLALLAPMICGKHIHVHHLFDGTTGNTRDVQYLALLAPMICGKHIHVHHLFDGTTGNTRDVQYLALLAPMICGKHIHVHHLFDGTTGNTRDVQYLALLAPMICGKHIHVHHLFDGTTGNTRDVQYLALLAPMICGKHIHVHHLFDGTTGNTRDVQYQTLLANKPYLFKQRSSNKINVLSPILMGMSLKFLIFITK

Sequence clustering based on sequence similarity using MMseqs2