Basic Information

Gene Symbol
Jarid2_1
Assembly
GCA_947859195.1
Location
OX401907.1:1207373-1229932[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.9e-21 5e-18 65.3 0.0 6 89 622 702 618 702 0.92

Sequence Information

Coding Sequence
ATGGGTCTGGAGCAGCTCCATGATAATAATAATATATGGTACGCCACGCGTAAGGTGCAAGCCCAGCGGAAGTTCGCACAGGGCGCGTACACCCCCGCTGTGGCCAGTGCAGCTGTTCCCGAGAAGAAGCCAGTGGAGCCTGCCAGAGAAGGAAACATCATCCGGAACCATGTGCCAGCCAGGACGTTATTAGACATCGTGTCTTTCAAAAATATCCATGCTCATCTACAACCAGTTGTAGTTATACAAAGGATGCTAAACATAACATTGGACACAAACAAAAAACAAAAGAACATGGAGCCAACGACACAAAACAAGAAAAAAATACCAATAGCGAAGAAGAAGTTCGTCAGGACCAAAAAACCCCACAATTGGGATATGAAACTGAGGTCACGCGGGGTTGTGAAATCAACTAGGTCTTCGGAACCAAACATATCAACAGAACAGACCACAGTACGTAAGCGCAAAAACACCGAACCGGAAGTTCCAAAACCGGCTAAGAGGCGAGACTGCACTGAGATCTTTACTTCAGACGATTACAAGCCTCTTACCTATTTTGCCAAAACTGGAGGTGCTGCTGCAGTTTCAAAATCACCCATCCTGACCGGACAAAGTCCAATGTTGCTGGCGACAGGACCTGATGACGTTCTCGAGCCTATTTTGAGTCCATCGGTGGAGGTGAATCCGCCACCAACTAAGGTGGTGAAACCGTGTACAACGTCGGAAAATCAGTCTCTAACCAAGGCTGTGGAGTCAAATAAAAGCCCGAACACATCTCCAACCAAAACGGCTGTTCCTGAACCTCAACCGGGCCCAAGCGGAGAATACCCCACCTTCGAGCCTCCTTCATTTACACCATTACCTCCGGACGCCTATAGCCCGTGCGAGTTCTTCGACAATGAGTCCGATGGGCCTTATTATAATAGTAACGGGATCCAGCGTTGGATAACTGGCTCTGACAAAGACTCTGACCGCCGTGCGCCGCCCGCCTATTGCCCGCCGCCCGCCTACTGCCCGCCGCCCGCGCGCTGCCCCCCACCCGCGCGCTGCCCCGCCACCGCATGGCTCACTCTCAAACAAGTCATCGAAGCCCCCGCGCAAGAACTACAAGCGAGATGCAAAAAATGTGCAACATGCTTAAAAGTAGCCAAGCTCATCATGCTATCCCGGTTTTTAACCAAATACAGAGAAGTAGAGTGTACCGGCGAAGAAGAAAACTCGCACGAACCGAGAGATAACACGATGGTATCACAGGACGGCGATCTGTACATAGAGCTGCTGCCCAAACATAACTTGTTTATGATAAAATTGAAAATCCAGACGCTGCACAGTAAGCCGATGTTGAGCGCGCGGCTCGTTCCCAGATCGGAAGCCCATACCAGTAAAGAGCTGAGTCTGATAGAGCATGACAGCATATTGGACCAGCTGATGAAAATGTTGAATTTAAATATGATGGCTCCCAGCTCCCTTTGTTCACCCGACTCTGAGACCGAATCGCATCTGGCCTTCGACACGGTGAAGACCGAGTCGGTTATAGACCTCACACAGACTGATAAATGCTCGGTGCGGTCTGAAGGGCGCAGTGACGCCGGCTCGCAGCTGTGTGCTTTCCCCAAAAGCGTGGACCGGGCCAAAGTGGTCGAAGCTCCGGTGTTCTACCCAACCAAGGAAGAGTTCGCTGATCCCATCGCATACTTTAAAAAAATCGCGCCAGTGGCATCGAGATACGGGCTGTGCAAAATCATACCGCCTCCGTCGCACTGGGTCGCGCCAAAGTGCAAAATAGATGACGACATCCGGTTCGACGTCATCAAGCAATACATATCGCGGCTGTATAGCCGATGGGGGCCCGCGGCAAGGGAGATGTGCGCTATCAAAGCGTGTTTAAGATCGCAGAATCTAAACCTCACGCGATCTCCTCTGTTGGACGGCATCGAAGTAAACTTGGCGAAGTTGTATCACGTGGTGCAGCGTAACGGTGGCCTACAAAAAGTAATCGACAAGAAGCGCTGGGGCCGCGTCGCGCAGGAGATGAGCTTCTCGACCACCCCCAACCCGGAGAAGAAGCTGGATCAGATCTACGTCAAATACCTGCTGCCCTATGACACACTTACACATAAAGAACGGCAAGAAATTATCAGGAAAGTGGAAAAGCGTTGGAACAAGTGTAACCAGAAAATGCTGGACCGGGCGCTGAACCCCCTGCATCGCCAGAAGCGGTTGCTCGGCGAGTCTGAGTCGTCTGACGAGGACACGAGCGACGACAGCGAGGTGGGCAGCGCGCTGGCAGAGGCAGAGGACTGCATAGTACCCGGCTCATCTATGAACCTCACCAAATTTAAAAGGGTGGCCGCTATAGCGCTCGAGAATAACTTCCAAGCTCGAGACCCGCCGCCCCTAGTTGTTGAGAATCAGTACTGGTCGCTGCTGTTGCTTGGCATGGAGCATGTGTGCGTCAACACCGCCTCCATCGACACCGGCGAGGAGGGGTACGGGTTCAGCAAGAACAGGAAAGACCCATATTCGGAGCACCCATGGAACTTGAAGATGCTGAGCCAGAACAGTGGCAACGTGCTGCGCTCCCTAGGCCCTGTGCTGGGCCTGACCGTGCCCACGTTGCACCTGGGCATGGTGTTTTCTACCAGCTGCTGGCATAGCGACCCCCACGGCCTGCCCTGGATAGAATACATGCACCAAGGCTCGCCCAAGATTTGGTACGGCATACCCAACGAGCAGAGTCAGAACTTCCGCAAGGCGGTGGAGACGCTCTGCCCCACGTCGTGCCAGAACAAGTCCATATGGTTGCCGTCTGACATCAGCATGATCCCGCCGACGCTGCTGCTAGAACACAACGTGTCTATGTGCAGGATGACGCAGAAACCCGGGGAATTCATCATGGTCTTCCCGAAAGCGTTCTCTTGCTCGATATCAACGGGGTATACTCTGTCTGAAAGTGTTTACTTCGCGACCCATTCCTGGCTGAACAGTGTCCATCTGGTATTCCAAGAGCTGCGCGAGAGCTGCGAGCCGAGCATGTTCTCGCTGGAGCAGCTGCTGCTGGCGGTGGCGCAGGACGCGCGCACGCCGCTCGACGTGCTGCAGCAGGCGCACGCCACGCTCTGCACCATACTCACCGACGAACGCCAGTGCCGCGAGGATCTAAAGGCCTGCGCGCTGCCCTTCGTTATCGACAAGAACCGCGAGCACGTGACCAACAAGAAGCGGCGCAACACTAGCGCGTGGAATGTGCGCGACCTCGACGAGTGCGAGCTGTGCCGTATGACGCTCTACCTCTCGAAGGTGTCGGACCTGCCCGGTCGGAAGTCGTCGGTGTGCCTGCAGCACGCGCTGCAGCTGCTGGAGGCGCGAGGCTACGAGAAGCTCCCGGCCGACATGCAGGTCGTCATATACGTGCCCGAGGACGAACTCGACGCGGTCCTCAAAAAGGTACAGGAGCGATTGCTAGCAGCAGCAGCTCATCACAACCGTCCGTGA
Protein Sequence
MGLEQLHDNNNIWYATRKVQAQRKFAQGAYTPAVASAAVPEKKPVEPAREGNIIRNHVPARTLLDIVSFKNIHAHLQPVVVIQRMLNITLDTNKKQKNMEPTTQNKKKIPIAKKKFVRTKKPHNWDMKLRSRGVVKSTRSSEPNISTEQTTVRKRKNTEPEVPKPAKRRDCTEIFTSDDYKPLTYFAKTGGAAAVSKSPILTGQSPMLLATGPDDVLEPILSPSVEVNPPPTKVVKPCTTSENQSLTKAVESNKSPNTSPTKTAVPEPQPGPSGEYPTFEPPSFTPLPPDAYSPCEFFDNESDGPYYNSNGIQRWITGSDKDSDRRAPPAYCPPPAYCPPPARCPPPARCPATAWLTLKQVIEAPAQELQARCKKCATCLKVAKLIMLSRFLTKYREVECTGEEENSHEPRDNTMVSQDGDLYIELLPKHNLFMIKLKIQTLHSKPMLSARLVPRSEAHTSKELSLIEHDSILDQLMKMLNLNMMAPSSLCSPDSETESHLAFDTVKTESVIDLTQTDKCSVRSEGRSDAGSQLCAFPKSVDRAKVVEAPVFYPTKEEFADPIAYFKKIAPVASRYGLCKIIPPPSHWVAPKCKIDDDIRFDVIKQYISRLYSRWGPAAREMCAIKACLRSQNLNLTRSPLLDGIEVNLAKLYHVVQRNGGLQKVIDKKRWGRVAQEMSFSTTPNPEKKLDQIYVKYLLPYDTLTHKERQEIIRKVEKRWNKCNQKMLDRALNPLHRQKRLLGESESSDEDTSDDSEVGSALAEAEDCIVPGSSMNLTKFKRVAAIALENNFQARDPPPLVVENQYWSLLLLGMEHVCVNTASIDTGEEGYGFSKNRKDPYSEHPWNLKMLSQNSGNVLRSLGPVLGLTVPTLHLGMVFSTSCWHSDPHGLPWIEYMHQGSPKIWYGIPNEQSQNFRKAVETLCPTSCQNKSIWLPSDISMIPPTLLLEHNVSMCRMTQKPGEFIMVFPKAFSCSISTGYTLSESVYFATHSWLNSVHLVFQELRESCEPSMFSLEQLLLAVAQDARTPLDVLQQAHATLCTILTDERQCREDLKACALPFVIDKNREHVTNKKRRNTSAWNVRDLDECELCRMTLYLSKVSDLPGRKSSVCLQHALQLLEARGYEKLPADMQVVIYVPEDELDAVLKKVQERLLAAAAHHNRP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-