Basic Information

Gene Symbol
stc
Assembly
GCA_032432895.1
Location
JAOYRS010000019.1:252747-264395[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 2 2.5e+04 -4.3 1.6 15 19 492 496 491 496 0.81
2 15 0.048 6.1e+02 1.1 1.4 2 10 524 532 524 532 0.92
3 15 3.7e-05 0.46 11.0 18.1 4 19 540 555 538 555 0.93
4 15 0.025 3.1e+02 2.0 0.7 6 12 581 587 580 589 0.89
5 15 2e-07 0.0025 18.3 15.2 1 18 591 608 591 609 0.99
6 15 0.94 1.2e+04 -3.1 0.3 8 11 614 617 613 617 0.86
7 15 0.00013 1.6 9.3 16.5 1 19 650 668 650 668 0.99
8 15 1.4e-05 0.18 12.3 11.8 1 19 709 731 709 731 0.88
9 15 2 2.5e+04 -4.7 1.7 6 10 761 765 761 765 0.95
10 15 0.015 1.9e+02 2.7 7.3 1 11 771 781 771 782 0.93
11 15 0.086 1.1e+03 0.3 1.1 4 10 786 792 785 792 0.92
12 15 2.1e-05 0.27 11.8 11.8 3 19 800 816 798 816 0.92
13 15 0.00071 8.9 6.9 8.5 9 18 862 871 860 872 0.92
14 15 4.4e-08 0.00055 20.4 13.8 1 17 908 926 908 932 0.85
15 15 0.0018 23 5.6 6.6 1 12 938 948 938 961 0.82

Sequence Information

Coding Sequence
ATGTCTCAGTGGAATAACTCATACAACTACAATAATCAATATCAACCTCCTAATAATTGGAATGgtgaatataataatcaatatgtaAACCAAACATACTATCCTAATAGGCAATATGAGCACAACAATCAGTATGTTAGCTTTGACGAATTTCTATCACAAATGCATATTTCAAATGTTCCTCAAACAAACCATGCTAACTACAACAATATGCAATATCAAAACTATCCCAATACTCAATTTAACAATGTACCAAGTTATCATAATGGAGCTACAGCACATAATTCTCAATCAGAATATATGTATGCATCAAACACTGCCAGTTTTCCTAGTAATGAAGAATCTTACCAACCTAATACACAAAACCAATATAATGTTAACTCAGTGagttcaaatgaaaataattatactagtgAAGTAGTTTTTAAATCAAAGTTGACACCAACAGCGACTGAATTTGTTCCTAAAAAGTCTCAAGATAAACCTGATAGCAGTCCTAATAAGGAAATGGTACAAGAATCAAATTCATCAAGTACTACGCTAAGTGAATCATCTAGTAATCATTCAAAGCCATCTAGTTCAACAAATTGGAGAGAGAGGCCCCAGAGCTCTCACCATGGCAGCAGTTCATCTTTTGTAGAAAACAATTCATTTCAAAAATCTAGAACACAAGATTCAAATAGCAAAAACAGAGAATCTAAATATGAATCTAAAAATCGTAATCAAGAATATCATAATAGCAGTAATGAATCAACTAGTTATAATTCTAAGAACAACAAAGACTCTGCAAACCGTCCCAATGAATTAAACCCTCGGAACCGTAAATCTAAAAACCGTTCAGCTGAGAACAACCACGATGCAAACCATCGCAACCATGATCATCCAGAGcacaataataatcatagatATCGCAGCAATGattcaaatacatataatcaagAAGCTAGAAGCTCTCAAGATGATCCAAGTTGTTCCCATGAGACCAATAACCAAGAAGGGGGCCAATCTAAACATTCAAAGGCTAAAAATAAAGAGTCTGATGTAGGGCGTACTTTTTATAATAGCACAATGCCTAAAGAAAGTCAAGATGTGAGAAATGGAAGGGAAAGTCATGGAAAAGGTCGTAAATGGGCTGGCAGTCAGCGAGTACGAGCTGAACGTAGCTATGTTGAAGATGAACAATATGCAAATACATATCTGCAATATAGAGGAGAAAGGAATAGAGATAATGTACCTAATAGCCCAATGAAAGCAAAACATAAATCGTCTACAGACTCTAGaggtaatACAGAAATGACACAGCGTGAGCGTCTTAGTGAGCAACTGGATAAAGGAACCTTGGAGTGTCTAGTATGCTGTGAAAGAGTGAAGCAGATAGACCCAGTGTGGTACTGCGGCAATTGTTATCATGTGTTCCATTTAGCTTGTACAAGGAAATGGGCTATGAGTAGTATGGTTGaAAGCAAATGGCGGTGTCCAGCTTGTCAAAACACAAATCAAGTTGTACCAACAGAGTACAGATGTATGTGTGGAACAATACGTAATCCTGAGTATCAGAGGGGTTCCAGTGGTGCCCACACTTGTGGCAAGGCGTGTAAGAGACCTAGAAACTGTCCGCATCCTTGCACTCTACTGTGTCACCCTGGTCCTTGCCCACCTTGCCAGGCTACTGTTAGCAAgcaATGTGGATGCGGAGTCGAAACTCGCTCAGTTCTCTGTAGCAGCAAGTTACCACAAGTATGTGGAAGGGTGTGTCATAAGCAGCTTGAATGTGGTGTGCATTCTTGTACCAAGGACTGTCATGAAGGGCCCTGTGACCCTTGTGGGGAGACTGTGACGCaagTGTGCCACTGCCCGGCCGCGTCCACGCGCTCCGTGGCCTGCACGGCGCTCACGGGCGGCGCGCGCTCGTGGTCGTGCTCGGCGGAGTGCGGGCGCGTGCTGGCGTGCGGCGCGCACGTGTGCCGCGCGCCCTGCCACCCGCCGCCGTGCGAGCCCTGCCCGCTGCGCCCCGACAGCGTGAGGAGCTGTCCGTGCGGAGGGATGAGAATCGATAAGGATCAAAGGAAATCGTGCACAGATCCTATACCTCTATGTGGTAACATCTGTACCAAGCCTTTGCCCTGTGGTCCTCCGGGAGATAAACACTTCTGTAAAGAAAGCTGTCATGAagGCGCGTGTCGCGTGTGCCCCGACACCACGCTGCTGCAGTGTCGCTGCGGACACTCCAGCCGGGAGGTGCCGTGCGCTGATCTGCCAGAAATGTACAATAATGTGTTGTGTCAGAGAAAATGTAACAAGAAGCTGTCGTGCGGCCGCCACCGCTGCCGCACGGCGTGCTGCGCGGCCGCGTCGCACCGCTGCACGCTGGTGTGCGCGCGCACGCTGTCCTGCCAGCTGCACCGCTGCGAGGAGTTCTGCCACACCGGACACTGTGCCATGTGTCCTAGAGTCAGTTTCGAGGAGCTGCGCTGCGAGTGCGGCAGCGAGGTGATCCTGCCGCCCGTGCGCTGCGGCACCAAGCCGCCCGCGTGCGCCGCGCCgtgccgccgccgccgcgcctgCGCGCACCCGCCGCACCACGCCTGCCACGCCGGCGCCTGCCCGCCCTGCGTCGTGCTCACCACCAAGCGCTGCTACGGCGACCACGAGGAACGTAAAACAATTCCATGTTCTCAAGAGCAGTTCTCATGCGGCCTGCCCTGCGGCAAGCCACTACCGTGTGGAAAGCACACCTGCATCAAAACGTGCCATAAAGGCCCATGTGATGCTGGCAAGTGCACGCAGCCGTGCGCGGAGAAGCGGCCGTCGTGCGGGCACGCGTGCGCGGCGCCGTGCCACGTGGCGGCGCGCAGCGCGTGCCCCAGCGCCGCGCCCTGCCGCCGCGCCGTGCTGGCCACGTGCCCGTGCGCGCGCCGCAAGGCCGAGCGCGCCTGCTGCGACAACGCGCGCGACTACCTCAAAATGATGAGCACGCTAGCCGCTTCAAAAATGCAAGAAGGTGGAACCGTTGATTTGTCAGATCCGCAACGTCCAGGGAATATGTTGAAAACGCTGGAATGCGACGAGGAGTGCCTAGTGGAGGCTCGGTCGCGGCGTTTAGCGCTGGCGCTGCAGATCCGCAACCCGGACGTGTCCGCCAAGCTGGCGCCGCGCTACAGCGAGCACGTGCGCGCCACCGCCGCGCGCGACCCCGCCTTCGCGCAGCAAGTGCACGACCGGTTGACGGATCTGGTGCAACTTGCTAAAAAATCGAAACAAAAAACGCGAGCTCACTCGTTCCCATCAATGAACCGCCAGAAGAGACAGTTCATACACGAGCTCTGCGAACACTTCGGCTGCGAGAGCGTGGCGTATGACGCCGAGCCCAACAGGAATGTCGTGGCTACTGCGGACAAGGAAAAGTCATGGCTGCCAGCAATGAGTGTGCTAGAGGTGTTGGCTCGCGAGGCGGGCAAAAGGCGCGTGCCGGGGCCGGTGCTGCGCGCACCGCCCTCCGCAACCGCTGCCGCTAAATCGTCTGGAGGCTGGGCGACATTAACGTCTAACAACGCATGGGCGGCGCGCAGTCAAGCCGCCAAGCAGGAGCCGAAGATAGATTATTTCGACAACCCGCCAGAAAACTGA
Protein Sequence
MSQWNNSYNYNNQYQPPNNWNGEYNNQYVNQTYYPNRQYEHNNQYVSFDEFLSQMHISNVPQTNHANYNNMQYQNYPNTQFNNVPSYHNGATAHNSQSEYMYASNTASFPSNEESYQPNTQNQYNVNSVSSNENNYTSEVVFKSKLTPTATEFVPKKSQDKPDSSPNKEMVQESNSSSTTLSESSSNHSKPSSSTNWRERPQSSHHGSSSSFVENNSFQKSRTQDSNSKNRESKYESKNRNQEYHNSSNESTSYNSKNNKDSANRPNELNPRNRKSKNRSAENNHDANHRNHDHPEHNNNHRYRSNDSNTYNQEARSSQDDPSCSHETNNQEGGQSKHSKAKNKESDVGRTFYNSTMPKESQDVRNGRESHGKGRKWAGSQRVRAERSYVEDEQYANTYLQYRGERNRDNVPNSPMKAKHKSSTDSRGNTEMTQRERLSEQLDKGTLECLVCCERVKQIDPVWYCGNCYHVFHLACTRKWAMSSMVESKWRCPACQNTNQVVPTEYRCMCGTIRNPEYQRGSSGAHTCGKACKRPRNCPHPCTLLCHPGPCPPCQATVSKQCGCGVETRSVLCSSKLPQVCGRVCHKQLECGVHSCTKDCHEGPCDPCGETVTQVCHCPAASTRSVACTALTGGARSWSCSAECGRVLACGAHVCRAPCHPPPCEPCPLRPDSVRSCPCGGMRIDKDQRKSCTDPIPLCGNICTKPLPCGPPGDKHFCKESCHEGACRVCPDTTLLQCRCGHSSREVPCADLPEMYNNVLCQRKCNKKLSCGRHRCRTACCAAASHRCTLVCARTLSCQLHRCEEFCHTGHCAMCPRVSFEELRCECGSEVILPPVRCGTKPPACAAPCRRRRACAHPPHHACHAGACPPCVVLTTKRCYGDHEERKTIPCSQEQFSCGLPCGKPLPCGKHTCIKTCHKGPCDAGKCTQPCAEKRPSCGHACAAPCHVAARSACPSAAPCRRAVLATCPCARRKAERACCDNARDYLKMMSTLAASKMQEGGTVDLSDPQRPGNMLKTLECDEECLVEARSRRLALALQIRNPDVSAKLAPRYSEHVRATAARDPAFAQQVHDRLTDLVQLAKKSKQKTRAHSFPSMNRQKRQFIHELCEHFGCESVAYDAEPNRNVVATADKEKSWLPAMSVLEVLAREAGKRRVPGPVLRAPPSATAAAKSSGGWATLTSNNAWAARSQAAKQEPKIDYFDNPPEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00213096;
90% Identity
iTF_01182349;
80% Identity
-