Basic Information

Gene Symbol
SMARCC2
Assembly
GCA_032432895.1
Location
JAOYRS010000064.1:5499270-5511339[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.2e-14 2.8e-11 43.8 0.1 3 44 527 568 525 570 0.95

Sequence Information

Coding Sequence
ATGAAGGTATTCATGGACATGAAGCCAGGCGGCTCTTTGTGCACGGTGCTCGCCACCATGTTCCGTTTCAAGTCGGAGCAGCGGTGGCGCAAGTTCGACTTCCAGGTCGGTAAGAATCCATCTCGAAAGGATTTAAACGTACAAATGATGATGGAAATTGAATCTTCTTTGCTGGGAGCTGAACTTGTTCGTTCTCCATGCATTTTCATTCGGCCCGAAGTTGATAAAACCACTGCAAATAAAGTAAAGGATATTATTGTCAACCATCAAGGCGAAATATGTGAGGACGAAGAAGATGCAACGCACATTGTGTATCCAGCAGTTGATCCGTTAGAAGAGGAGTACGCTCGTCCTGTATTTAAACGTGGCAACAATGTTCTCGTACATTGGTATTATTTCCCAGATAGCCATGATACTTGGGCACAAGCTGAACTACCGgtagATATACCGGAATCAGCGAATTGGGATTGCAATCGTCCAGAACCGTGGCGAGTCGCCGCTACGTGGGCGTTGGATTTACCTCAATACAATGAGTGGATGAACGAGGAGGACTATGAAGTGGACGTCAATGGAAAGAAGAAGgtgcACAAATTACGCTTATCTGTTGACGATTTGATACCTGGTGGGGAAACTTCTGGCAAGGGCAAGAAAGGAAAGAGAAAGCGTTCACCTTCACCGCCGCCTCAGAAACATAGCAAGAGAAAGGGTCGCGTAGCCAAGCGCCGTGACAATGACGGAGAAGACGAGGACGACAACGCTTCACGAGATAACACTGATGTCGCGCCCACGCCTGAAAATGAACGCTCCACAGACACGAGTGCGCCGGCGCCGGCGAGTGCGGGGAGTGCGGGCGGCGCAGGCGCGTCGTCGCAGCCCGCCAGCGAGGCGGCGGACGCGCCCGCCACGCCGGCGCCCGCCATGGACGCGCACGACGACTCGCAGGGCAAGCACAGCGACTCCAACACGCAGgaGATGTTGACAAAAGAAGAATTAGAAGATAATGTAACAGATCAGACTCACCATATCGTTGTGCCGTCGTACTCCGCCTGGTTTGACTACAACTCGATCCATACTATTGAAAAACGCGCTTTGCCAGAATTTTTCAATAACAAGAACAAATCTAAGACCCCTGAAATATATTTGGCTTACAGAAACTTTATGCTAGATACATATAGATTAAACCCAACAGAGTACCTCACTAGTACCGCATGTCGTCGTAATCTAGCTGGTGACGTATGCGCCATTATGCGTGTTCACGGCTTTTTGGAACAATGGGGTCTTATTAATTACcaggtggAAGCAGAATCTCGTCCAACCGCCATGGGACCGCCACCCACGTCTCACTTCCACGTGCTATCCGACACACCGTCCGGTTTACAACCGCTTCAGGCGAGACCTACACAACCCCGTCCAGCGGAGAACGCAGCTGTACCCAAAGTGGAAGCAGGCTTACCAAATGGAACCGAAGCCGGTCCTCCGGTGAAGGCTGAACCTAACGTGAAACCTGAGCCTCTGCTTGAACTCGGTACTGCTTCCGGACTTAAGATGGACCAATACCGAGGCGGGGCTCGAGGTCGCGAATGGACGGACCAAGAGACTCTCTTACTACTAGAAGCGTTAGAACTGCACCGCGATGACTGGAACCGCGTTGCAGCGCATGTCGGCACTCGGACTCATGACGAATGCATATTGCACTTCCTGCGACTGCCCATTGAAGACCCATATTTGAATGATAATTCTGCTAGTGGCGTCCTCGGGCCGCTAGCCTACCAGCCCATCCCGTTCAGCAAGACCGGCAACCCCGTCATGAGCACGGTCGCCTTCCTCGCATCGGTGGTGGACCCGCGCATCGCCTCCAAGGCCACACGCGCCGCTATGGACGAATTCGCTGCTATTAAAGACGAGGTGCCAGCGGCCATGATGGAGGCGCACGTGAAGGCGGCGGGCACGCACGGGCCGTCCGCTGCGCTCGCCGCCACCGGCATCGCCGGCACCGCGCCGCCCGCACCTCCGCCCGgtGAAAAGAAAGAAGGTGCAGCAGAAGTGAAAACTGAAGCAATGGACGTAGATGAAGGTGAGGCCAAGGTCAAAGAGGAGCCCGCAGAGACGCCGCCCGCAGACGACGTCAAGGACAACAAGGACGACGCTTCGCCGCCGCCAGAAGCACCAGCGGCGGTGGATACCAAGCTACAATCCGCTGCGGCAGCAGCGCTCGCCGCCGCAGCAGTAAAAGCAAAACACTTAGCCGGTGtcgaagaaagaaaaataaaatcccTTGTAGCCTTACTAGTGGAAACTCAAATGAAAAAGCTAGAGATTAAGCTACGCCACTTTGAAGAGTTGGAAGCCACTATGGAGAGGGAGAGAGAAGgtTTGGAGTATCAACGGCAGCAGTTAATTCAGGAACGTCAGCAATTTCATTTAGAGCAATTGAAAGCGGCTGAATTCCGCGCGAGAAATCACGCCAttcaaagGTTACAAGCGGAGTCCGGCGGCGTGCCGGTAGTGGCGGGCGTGCCGGTGGTGGCGGGCGCGGGCCCGGCGCCGGCGGGGCCGCCCGTGCCGCCCGAGCCGCCTGCGGACGCGCCTTCGCAACCCCACCACCCCTAG
Protein Sequence
MKVFMDMKPGGSLCTVLATMFRFKSEQRWRKFDFQVGKNPSRKDLNVQMMMEIESSLLGAELVRSPCIFIRPEVDKTTANKVKDIIVNHQGEICEDEEDATHIVYPAVDPLEEEYARPVFKRGNNVLVHWYYFPDSHDTWAQAELPVDIPESANWDCNRPEPWRVAATWALDLPQYNEWMNEEDYEVDVNGKKKVHKLRLSVDDLIPGGETSGKGKKGKRKRSPSPPPQKHSKRKGRVAKRRDNDGEDEDDNASRDNTDVAPTPENERSTDTSAPAPASAGSAGGAGASSQPASEAADAPATPAPAMDAHDDSQGKHSDSNTQEMLTKEELEDNVTDQTHHIVVPSYSAWFDYNSIHTIEKRALPEFFNNKNKSKTPEIYLAYRNFMLDTYRLNPTEYLTSTACRRNLAGDVCAIMRVHGFLEQWGLINYQVEAESRPTAMGPPPTSHFHVLSDTPSGLQPLQARPTQPRPAENAAVPKVEAGLPNGTEAGPPVKAEPNVKPEPLLELGTASGLKMDQYRGGARGREWTDQETLLLLEALELHRDDWNRVAAHVGTRTHDECILHFLRLPIEDPYLNDNSASGVLGPLAYQPIPFSKTGNPVMSTVAFLASVVDPRIASKATRAAMDEFAAIKDEVPAAMMEAHVKAAGTHGPSAALAATGIAGTAPPAPPPGEKKEGAAEVKTEAMDVDEGEAKVKEEPAETPPADDVKDNKDDASPPPEAPAAVDTKLQSAAAAALAAAAVKAKHLAGVEERKIKSLVALLVETQMKKLEIKLRHFEELEATMEREREGLEYQRQQLIQERQQFHLEQLKAAEFRARNHAIQRLQAESGGVPVVAGVPVVAGAGPAPAGPPVPPEPPADAPSQPHHP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00782588;
90% Identity
iTF_00248028;
80% Identity
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